View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4676_high_21 (Length: 261)

Name: NF4676_high_21
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4676_high_21
NF4676_high_21
[»] chr2 (18 HSPs)
chr2 (14-164)||(40729205-40729356)
chr2 (5-252)||(18292410-18292680)
chr2 (168-249)||(40729146-40729227)
chr2 (11-106)||(36732029-36732125)
chr2 (11-106)||(40447722-40447818)
chr2 (168-248)||(40447887-40447967)
chr2 (168-248)||(41339973-41340053)
chr2 (183-252)||(34397535-34397604)
chr2 (93-156)||(34397603-34397667)
chr2 (105-164)||(40447850-40447909)
chr2 (179-223)||(12774137-12774181)
chr2 (170-248)||(28266832-28266910)
chr2 (180-231)||(44789002-44789053)
chr2 (93-142)||(44788932-44788982)
chr2 (179-216)||(35670504-35670541)
chr2 (124-163)||(41340032-41340071)
chr2 (218-246)||(40447976-40448004)
chr2 (218-246)||(40729110-40729138)
[»] scaffold1838 (3 HSPs)
scaffold1838 (1-164)||(448-614)
scaffold1838 (166-252)||(590-676)
scaffold1838 (218-251)||(681-714)
[»] chr1 (25 HSPs)
chr1 (1-164)||(9537169-9537332)
chr1 (11-164)||(8421839-8421990)
chr1 (168-252)||(8421968-8422052)
chr1 (168-248)||(43407087-43407167)
chr1 (169-248)||(37666898-37666977)
chr1 (11-106)||(338349-338445)
chr1 (168-248)||(338514-338594)
chr1 (168-239)||(9537120-9537191)
chr1 (169-252)||(33007367-33007450)
chr1 (105-164)||(338477-338536)
chr1 (105-164)||(43407145-43407204)
chr1 (177-231)||(16075157-16075211)
chr1 (179-252)||(25921905-25921977)
chr1 (180-231)||(6836394-6836445)
chr1 (179-221)||(18472635-18472677)
chr1 (170-231)||(35761741-35761803)
chr1 (112-144)||(6836314-6836346)
chr1 (218-248)||(9537068-9537098)
chr1 (170-228)||(28561825-28561885)
chr1 (127-164)||(37666956-37666993)
chr1 (218-246)||(338603-338631)
chr1 (220-252)||(33007328-33007360)
chr1 (105-161)||(33007432-33007488)
chr1 (218-246)||(37666861-37666889)
chr1 (218-246)||(43407050-43407078)
[»] chr7 (18 HSPs)
chr7 (11-164)||(49170081-49170236)
chr7 (1-142)||(22077899-22078044)
chr7 (1-252)||(12911409-12911673)
chr7 (169-252)||(40106217-40106300)
chr7 (168-248)||(10288511-10288591)
chr7 (170-252)||(12196412-12196494)
chr7 (40-164)||(12196474-12196600)
chr7 (168-248)||(15873695-15873775)
chr7 (170-252)||(11036062-11036145)
chr7 (169-246)||(49170023-49170102)
chr7 (105-164)||(10288569-10288628)
chr7 (119-164)||(40106193-40106238)
chr7 (218-252)||(40106305-40106339)
chr7 (179-216)||(48653549-48653586)
chr7 (218-246)||(10288474-10288502)
chr7 (218-250)||(11036025-11036057)
chr7 (218-246)||(15873658-15873686)
chr7 (170-221)||(22078083-22078135)
[»] chr5 (18 HSPs)
chr5 (11-164)||(40691148-40691303)
chr5 (168-252)||(40691281-40691365)
chr5 (170-252)||(30910206-30910288)
chr5 (168-248)||(537226-537306)
chr5 (97-164)||(38001343-38001411)
chr5 (9-104)||(30910033-30910129)
chr5 (168-245)||(38001389-38001463)
chr5 (93-144)||(6309116-6309168)
chr5 (180-216)||(6309186-6309222)
chr5 (179-231)||(25101617-25101669)
chr5 (179-231)||(25160710-25160762)
chr5 (93-164)||(30910155-30910226)
chr5 (179-218)||(42861832-42861871)
chr5 (96-144)||(6309083-6309132)
chr5 (221-252)||(38001478-38001509)
chr5 (93-139)||(27026850-27026899)
chr5 (218-246)||(537315-537343)
chr5 (112-144)||(6309064-6309096)
[»] chr4 (20 HSPs)
chr4 (11-164)||(55162427-55162582)
chr4 (1-93)||(28969072-28969164)
chr4 (169-252)||(55162561-55162644)
chr4 (168-252)||(28968955-28969044)
chr4 (177-248)||(40459366-40459437)
chr4 (177-252)||(13652950-13653025)
chr4 (177-252)||(13661075-13661150)
chr4 (29-106)||(40459210-40459288)
chr4 (110-164)||(28969022-28969076)
chr4 (179-227)||(2761801-2761849)
chr4 (93-164)||(40459307-40459379)
chr4 (208-252)||(55162638-55162682)
chr4 (180-231)||(69782-69833)
chr4 (93-144)||(69712-69764)
chr4 (112-144)||(69696-69728)
chr4 (111-142)||(55162630-55162661)
chr4 (220-252)||(13653032-13653064)
chr4 (220-252)||(13661157-13661189)
chr4 (218-246)||(40459446-40459474)
chr4 (218-246)||(55162687-55162715)
[»] chr8 (12 HSPs)
chr8 (168-252)||(41958138-41958222)
chr8 (1-149)||(44436310-44436463)
chr8 (93-164)||(44436478-44436550)
chr8 (179-221)||(22635730-22635772)
chr8 (93-149)||(44436442-44436499)
chr8 (180-232)||(44436540-44436592)
chr8 (180-213)||(22816031-22816064)
chr8 (93-144)||(22635789-22635841)
chr8 (93-144)||(22816082-22816136)
chr8 (179-216)||(3189142-3189179)
chr8 (170-230)||(40841215-40841276)
chr8 (108-144)||(22816161-22816197)
[»] chr6 (8 HSPs)
chr6 (168-252)||(23260330-23260414)
chr6 (168-248)||(10751280-10751360)
chr6 (168-248)||(34636593-34636673)
chr6 (170-231)||(32449954-32450016)
chr6 (127-164)||(10751338-10751375)
chr6 (179-230)||(13773121-13773172)
chr6 (218-246)||(23260297-23260325)
chr6 (218-246)||(34636682-34636710)
[»] chr3 (12 HSPs)
chr3 (168-248)||(5004440-5004520)
chr3 (168-248)||(7336414-7336494)
chr3 (168-252)||(16975726-16975810)
chr3 (180-252)||(43277762-43277834)
chr3 (168-248)||(46404321-46404401)
chr3 (105-164)||(7336472-7336531)
chr3 (127-164)||(5004498-5004535)
chr3 (112-144)||(17542462-17542494)
chr3 (218-246)||(5004403-5004431)
chr3 (218-246)||(7336377-7336405)
chr3 (170-221)||(9104588-9104640)
chr3 (218-246)||(16975815-16975843)
[»] scaffold0041 (2 HSPs)
scaffold0041 (11-57)||(33202-33248)
scaffold0041 (181-221)||(33038-33078)
[»] scaffold0013 (1 HSPs)
scaffold0013 (93-142)||(242844-242894)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 40729356 - 40729205
Alignment:
14 agaaagatgaaaatgtgagtttgtgaaatgatggacttttggttgtgtgtttgatgatgcattaatatttgagtgtaattgccttagtggc-ggttataa 112  Q
    ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||    
40729356 agaaagatgaacatgtgaatttgtgaaatggtggacttttggttgtgtgtttgatgatgcgttaatatttgactgtaattgtcttagtggcaggttataa 40729257  T
113 ttatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
40729256 ttatattctgtgtggtgccttagtggcgggttttagtctgcattttcatgat 40729205  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 18292680 - 18292410
Alignment:
5 aaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttggttgtgtgtttgatgatgcattaatatttgagt-----------gtaatt 93  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||  |           ||||||    
18292680 aaagaaaagagaaagatgaaaatgtgagtttgtgaaatgattgacggttggttgtgtgtttgatgatgcattaatatttggttaatatttggctgtaatt 18292581  T
94 gccttagtggcgg-ttataattatat-tctgtgtggtgccttagtggcgggttttaatctgcatttt--------catgattga---gttttaatctgca 180  Q
    |||||||||| || |||  ||||||| |||||| ||||||||||||||||||| |||| |  |||||        | | | ||    |||||| ||||||    
18292580 gccttagtggtgggttaatattatatatctgtggggtgccttagtggcgggttataat-tatattttgtgtggtgccttagtggcgggttttagtctgca 18292482  T
181 ttttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
18292481 ttttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtgt 18292410  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 40729227 - 40729146
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctg 249  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||    
40729227 gttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggtggaaattgcaattatattctg 40729146  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 36732125 - 36732029
Alignment:
11 aagagaaagatgaaaatgtgagtttgtgaaatgatggacttttgg-ttgtgtgtttgatgatgcattaatatttgagtgtaattgccttagtggcgg 106  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||  |||||||||||||||| |||| |||||||||||||| |||||    
36732125 aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcgtgatgatgcattaatacttgattgtaattgccttaggggcgg 36732029  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 40447722 - 40447818
Alignment:
11 aagagaaagatgaaaatgtgagtttgtgaaatgatggacttttgg-ttgtgtgtttgatgatgcattaatatttgagtgtaattgccttagtggcgg 106  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||||| |||| ||||||||||||||||||||    
40447722 aagaaaaagatgataatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgactgtaattgccttagtggcgg 40447818  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 40447887 - 40447967
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||    
40447887 gttttagtttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 40447967  T

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Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 41340053 - 41339973
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||| ||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
41340053 gttttagtcttcattttcatgaccatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 41339973  T

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Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 34397604 - 34397535
Alignment:
183 ttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||    
34397604 ttcatgatcatgcatggtatatgcatctgtgtggtgccttagtggcagaaattgcaattatattctgtgt 34397535  T

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Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 34397667 - 34397603
Alignment:
93 tgccttagtggcgg-ttataattatattctgtgtggtgccttagtggcgggttttaatctgcatt 156  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
34397667 tgccttagtggcgggttataattatattctgtgtggtgccttagtggcgggttttagtctgcatt 34397603  T

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Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 40447850 - 40447909
Alignment:
105 ggttataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
40447850 ggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgat 40447909  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 12774181 - 12774137
Alignment:
179 cattttcatgatcatgcatggcatatgcatctgtgtggcgcctta 223  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||    
12774181 cattttcatgatcatgcatcgcatatgcatctgtgtggtgcctta 12774137  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 28266910 - 28266832
Alignment:
170 tttaatctgcattttcatgatcatgcatggcatatgcatctgtgtgg-cgccttagtggcgggaattgcaattatattct 248  Q
    |||| ||| |||||| ||||||||||||||||||||||||| |||||  | |||||||||||| ||| ||||||||||||    
28266910 tttagtcttcattttaatgatcatgcatggcatatgcatctatgtggatgtcttagtggcggg-attacaattatattct 28266832  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 44789002 - 44789053
Alignment:
180 attttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcggg 231  Q
    ||||||||||||||||| ||||||||||||||||||| ||||  ||||||||    
44789002 attttcatgatcatgcaaggcatatgcatctgtgtggtgcctgtgtggcggg 44789053  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 44788932 - 44788982
Alignment:
93 tgccttagtggcgg-ttataattatattctgtgtggtgccttagtggcggg 142  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||||||    
44788932 tgccttagtggagggttacaattatattctgtgtggtgccttagtggcggg 44788982  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 35670541 - 35670504
Alignment:
179 cattttcatgatcatgcatggcatatgcatctgtgtgg 216  Q
    ||||||||||||||||||| ||||||||||||||||||    
35670541 cattttcatgatcatgcatagcatatgcatctgtgtgg 35670504  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 41340071 - 41340032
Alignment:
124 gtggtgccttagtggcgggttttaatctgcattttcatga 163  Q
    |||||||||||||||||||||||| ||| |||||||||||    
41340071 gtggtgccttagtggcgggttttagtcttcattttcatga 41340032  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 40447976 - 40448004
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
40447976 gccttagtggcgggaattgcaattatatt 40448004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 40729138 - 40729110
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
40729138 gccttagtggcgggaattgcaattatatt 40729110  T

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Target: scaffold1838 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 448 - 614
Alignment:
1 aattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttggttg-tgtgttt-gatgatgcattaatatttgagtgtaattgcctt 98  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |||||||  ||||||||||| ||||||||||||    
448 aattaaagaaaagagaaagttgaaaatgtgagtttgtgaaatgatgaacttttggttggtgtgttttgatgatgtgttaatatttgactgtaattgcctt 547  T
99 agtggcgg-ttataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
548 agtggcgggttataattatattctgtgtggtgccttagtggcgagttttagtctgcattttcatgat 614  T

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Target: scaffold1838; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 590 - 676
Alignment:
166 gagttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    |||||||| |||||||||||||||||||| | ||||||||||| ||||||  |||||||||| |||||||||||||||| |||||||    
590 gagttttagtctgcattttcatgatcatgaaaggcatatgcatttgtgtgatgccttagtggtgggaattgcaattatagtctgtgt 676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 681 - 714
Alignment:
218 gccttagtggcgggaattgcaattatattctgtg 251  Q
    ||||||||||||||||||||||||||||||||||    
681 gccttagtggcgggaattgcaattatattctgtg 714  T

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Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 9537332 - 9537169
Alignment:
1 aattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttggttgtgtgtttgatgatgcattaatatttgagtgtaattgccttag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| || |||||||| |||||||| |||||    
9537332 aattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttggttgcgtgtttgaccatgcgtt-atatttgattgtaattgtcttag 9537234  T
101 tggc-ggttataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
9537233 cggcgggttataattatattctgtgtggtgccttagtggcgggttttagtctacattttcatgat 9537169  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 8421839 - 8421990
Alignment:
11 aagagaaagatgaaaatgtgagtttgtgaaatgatggacttttgg-ttgtgtgtttgatgatgcattaatatttgagtgtaattgccttagtggc-ggtt 108  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| ||||||| |||||||||||||||||      ||||||| |||||||||| ||||    
8421839 aagagaaagatgaaaatgtgagtttgtgaaatgactgacttttggtttgtgtgcttgatgatgcattaata----cctgtaattaccttagtggcaggtt 8421934  T
109 ataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
     | |||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
8421935 gtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgat 8421990  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 8421968 - 8422052
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||    
8421968 gttttagtctgcattttcatgatcatgcatggcatatgcatctatgtggtgccttagtggcggaaattgcaattatattctgtgt 8422052  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 43407167 - 43407087
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
43407167 gttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattct 43407087  T

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Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 37666977 - 37666898
Alignment:
169 ttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
37666977 ttttagtctgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattct 37666898  T

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Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 338349 - 338445
Alignment:
11 aagagaaagatgaaaatgtgagtttgtgaaatgatggacttttgg-ttgtgtgtttgatgatgcattaatatttgagtgtaattgccttagtggcgg 106  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||||| |||| ||||||||||||||||||||    
338349 aagaaaaagatgagaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgactgtaattgccttagtggcgg 338445  T

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Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 338514 - 338594
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||    
338514 gttttagtttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 338594  T

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Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 9537191 - 9537120
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaa 239  Q
    |||||| ||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
9537191 gttttagtctacattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtggcgggaattgcaa 9537120  T

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Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 33007450 - 33007367
Alignment:
169 ttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||| ||| ||||||||| ||||||||| |||||||||||||||||| || |||||||||||||||||||||||||| |||||    
33007450 ttttagtctacattttcataatcatgcatagcatatgcatctgtgtggtgctttagtggcgggaattgcaattatattatgtgt 33007367  T

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Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 338477 - 338536
Alignment:
105 ggttataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
338477 ggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgat 338536  T

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Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 43407204 - 43407145
Alignment:
105 ggttataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
43407204 ggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgat 43407145  T

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Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 16075157 - 16075211
Alignment:
177 tgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcggg 231  Q
    ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||    
16075157 tgcattttcatgatcatgcatggcaaatgcatctgtgtggtgtcttagtggcggg 16075211  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 25921905 - 25921977
Alignment:
179 cattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||||||| ||| ||| |||||||||| |||||    
25921905 cattttcatgatcatacatgacatatgcatctgtgtggtgccttagtggtggg-attacaattatattttgtgt 25921977  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 6836394 - 6836445
Alignment:
180 attttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcggg 231  Q
    |||||| |||||||||||||||||||||||||||||| ||||  ||||||||    
6836394 attttcctgatcatgcatggcatatgcatctgtgtggtgcctgtgtggcggg 6836445  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 18472677 - 18472635
Alignment:
179 cattttcatgatcatgcatggcatatgcatctgtgtggcgcct 221  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
18472677 cattttcatgatcatgcatagcatatgcatctgtgtggtgcct 18472635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 35761803 - 35761741
Alignment:
170 tttaatctgcattttcatgatcatgca-tggcatatgcatctgtgtggcgccttagtggcggg 231  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||| ||||  ||||||||    
35761803 tttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 35761741  T

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Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 6836314 - 6836346
Alignment:
112 attatattctgtgtggtgccttagtggcgggtt 144  Q
    |||||||||||||||||||||||||||||||||    
6836314 attatattctgtgtggtgccttagtggcgggtt 6836346  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 9537098 - 9537068
Alignment:
218 gccttagtggcgggaattgcaattatattct 248  Q
    |||||||||||||||||||||||||||||||    
9537098 gccttagtggcgggaattgcaattatattct 9537068  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 28561825 - 28561885
Alignment:
170 tttaatctgcattttcatgatcatgcatggcatatgca--tctgtgtggcgccttagtggc 228  Q
    |||||| | ||||||||||||||||||||  |||||||  ||||||||| |||||||||||    
28561825 tttaattttcattttcatgatcatgcatgatatatgcatttctgtgtggtgccttagtggc 28561885  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 37666993 - 37666956
Alignment:
127 gtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||||||||||||| ||||| ||||||||||||||||    
37666993 gtgccttagtggcggattttagtctgcattttcatgat 37666956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 338603 - 338631
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
338603 gccttagtggcgggaattgcaattatatt 338631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 33007360 - 33007328
Alignment:
220 cttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||||||||||||||||||||||||| |||||    
33007360 cttagtggcgggaattgcaattatattatgtgt 33007328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 33007488 - 33007432
Alignment:
105 ggttataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcat 161  Q
    ||||||||||||||||| ||||||| ||| |||| || ||||| ||| |||||||||    
33007488 ggttataattatattctatgtggtgtcttcgtggtggattttagtctacattttcat 33007432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 37666889 - 37666861
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
37666889 gccttagtggcgggaattgcaattatatt 37666861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 43407078 - 43407050
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
43407078 gccttagtggcgggaattgcaattatatt 43407050  T

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Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 49170236 - 49170081
Alignment:
11 aagagaaagatgaaaatgtgagtttgtgaaatgatggacttttggtt-gtgtgtttgatgatgcattaatatttgagtgtaattgccttagtggcgg-tt 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||| ||    
49170236 aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaatacttgaatgtaattgccttagtggcgggtt 49170137  T
109 ataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
     |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||    
49170136 gtaattatattctgtgtggtgtcttagtggcggattttagtctgcattttcatgat 49170081  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 22077899 - 22078044
Alignment:
1 aattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttggttgtgtgtttgatgatgcattaatatttga--gtgtaattgcctt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   || | |||||||    
22077899 aattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttggttgtgtgtttgatgatgcgttaatatttgactatgcatttgcctt 22077998  T
99 agtggc-ggttataattatat-tctgtgtggtgccttagtggcggg 142  Q
    |||||| |||||  | ||||| ||| ||||||||||||||||||||    
22077999 agtggcgggttaataatatatctctttgtggtgccttagtggcggg 22078044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 12911673 - 12911409
Alignment:
1 aattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttgg-ttgtgtgtttgatgatgcattaatatttgagtgtaattgcctta 99  Q
    |||||||||||| ||||  |||||||||||||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||| |||||||||||||    
12911673 aattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatatttgactgtaattgcctta 12911574  T
100 gtggc-ggttataattata-ttctgtgtggtgccttagtggcgggttttaa------tctgcat-tttcatgatt---gagttttaatctgcattttcat 187  Q
    ||| | |||||  || ||| ||||  ||||||||| ||||||||||| |||      ||||  |  | | | | |   | |||||| |||||||||||||    
12911573 gtgacaggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctgtgtggtaccttagtggcgggttttagtctgcattttcat 12911474  T
188 gatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
     |||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||    
12911473 aatcatgtatggcatatgcatctgtgtggtgccttagtggtaggaattgcaattatattctgtgt 12911409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 40106217 - 40106300
Alignment:
169 ttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
40106217 ttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaatcgcaattatattctgtgt 40106300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 10288591 - 10288511
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
10288591 gttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattct 10288511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 12196494 - 12196412
Alignment:
170 tttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    |||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
12196494 tttagtctgcattttcatgatcatacatggcatattcatctgtgtggtgccttagtggcgggaattgcaattatattctgtgt 12196412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 12196600 - 12196474
Alignment:
40 aatgatggacttttggttgtgtgtttgatgatgcattaatatttgagtgtaattgccttagtgg-cggttataattatat-tctgtgtggtgccttagtg 137  Q
    |||||| |||| |||||||||||| ||||||||| ||||||||||  |||||||||||||||||  |||||  ||||||| |||||||||||||||||||    
12196600 aatgattgactgttggttgtgtgtctgatgatgcgttaatatttggctgtaattgccttagtggtgggttaatattatatatctgtgtggtgccttagtg 12196501  T
138 gcgggttttaatctgcattttcatgat 164  Q
    ||||  |||| ||||||||||||||||    
12196500 gcggactttagtctgcattttcatgat 12196474  T

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Target: chr7; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 15873775 - 15873695
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||| | |||||||||||| || |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
15873775 gttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 15873695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 11036145 - 11036062
Alignment:
170 tttaatctgcattttcatgatcatgcatg-gcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    |||| ||| |||||||||||||||||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
11036145 tttagtcttcattttcatgatcatgcattagcatatgcatctctgtggtgccttagtggcgggaattgcaattatattctgtgt 11036062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 49170102 - 49170023
Alignment:
169 ttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtgg-cgccttagtgg-cgggaattgcaattatatt 246  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||    
49170102 ttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggatgccttagtggccgggaattgcaattatatt 49170023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 10288628 - 10288569
Alignment:
105 ggttataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
10288628 ggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgat 10288569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 40106193 - 40106238
Alignment:
119 tctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
40106193 tctgtgtggtgccttagtggcggattttagtctgcattttcatgat 40106238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 40106305 - 40106339
Alignment:
218 gccttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||||||||| |||||||||||||||||||||||    
40106305 gccttagtggcaggaattgcaattatattctgtgt 40106339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 48653586 - 48653549
Alignment:
179 cattttcatgatcatgcatggcatatgcatctgtgtgg 216  Q
    |||||||||||||||||||  |||||||||||||||||    
48653586 cattttcatgatcatgcataacatatgcatctgtgtgg 48653549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 10288502 - 10288474
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
10288502 gccttagtggcgggaattgcaattatatt 10288474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 11036057 - 11036025
Alignment:
218 gccttagtggcgggaattgcaattatattctgt 250  Q
    ||||||||||||||||||||||||||| |||||    
11036057 gccttagtggcgggaattgcaattatactctgt 11036025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 15873686 - 15873658
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
15873686 gccttagtggcgggaattgcaattatatt 15873658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 22078083 - 22078135
Alignment:
170 tttaatctgcattttcatgatcatgca-tggcatatgcatctgtgtggcgcct 221  Q
    |||| ||| |||||||||||||||||| | |||||||||||||||||| ||||    
22078083 tttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcct 22078135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 40691148 - 40691303
Alignment:
11 aagagaaagatgaaaatgtgagtttgtgaaatgatggacttttggtt-gtgtgtttgatgatgcattaatatttgagtgtaattgccttagtggcgg-tt 108  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||| || ||||||||||||||||| ||    
40691148 aagaaaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaatacttgactggaattgccttagtggcgggtt 40691247  T
109 ataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
     | |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
40691248 gtgattatattatgtgtggtgccttagtgacgggttttagtctgcattttcatgat 40691303  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 40691281 - 40691365
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||||||||||||    
40691281 gttttagtctgcattttcatgatcatgcaaggcatatgcatctgtgtggtgccttattggcggaaattgcaattatattctgtgt 40691365  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 30910206 - 30910288
Alignment:
170 tttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||    
30910206 tttagtctgcatttccatgatcatgcatggcatatgcatctgtgtggtctcttagtagcgggaattgcaattatattctgtgt 30910288  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 537226 - 537306
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||| | |||||||||||| || |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
537226 gttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 537306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 38001343 - 38001411
Alignment:
97 ttagtggcg-gttataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
38001343 ttagtggcgagttataattatattctgtgtggtgtcttagtggcgggttttaatctgcattttcatgat 38001411  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 30910033 - 30910129
Alignment:
9 aaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttgg-ttgtgtgtttgatgatgcattaatatttgagtgtaattgccttagtggc 104  Q
    |||| |||| |||||||||||| |||||||||||||| || |||||| ||||||  ||||| ||||||||||| |||| ||||||||||||||||||    
30910033 aaaaaagaacgatgaaaatgtgtgtttgtgaaatgattgaattttggtttgtgtacttgatcatgcattaatacttgattgtaattgccttagtggc 30910129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 38001389 - 38001463
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatat 245  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||| | | ||||||||||||||||||||||||    
38001389 gttttaatctgcattttcatgatc--gcatgacatatgcatctgtgtggtgtc-tagtggcgggaattgcaattatat 38001463  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 6309116 - 6309168
Alignment:
93 tgccttagtggcgg-ttataattatattctgtgtggtgccttagtggcgggtt 144  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||||||||    
6309116 tgccttagtggcgggttactattatattctgtgtggtgccttagtggcgggtt 6309168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 6309186 - 6309222
Alignment:
180 attttcatgatcatgcatggcatatgcatctgtgtgg 216  Q
    |||||||||||||||||||||||||||||||||||||    
6309186 attttcatgatcatgcatggcatatgcatctgtgtgg 6309222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 25101669 - 25101617
Alignment:
179 cattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcggg 231  Q
    ||||||||||||||||||||| |||||||||||||||| ||||  ||||||||    
25101669 cattttcatgatcatgcatggtatatgcatctgtgtggtgcctgtgtggcggg 25101617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 25160762 - 25160710
Alignment:
179 cattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcggg 231  Q
    ||||||||||||||||||||| |||||||||||||||| ||||  ||||||||    
25160762 cattttcatgatcatgcatggtatatgcatctgtgtggtgcctgtgtggcggg 25160710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 30910155 - 30910226
Alignment:
93 tgccttagtggcgg-ttataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||||||| || |||| ||||||||| ||||||    
30910155 tgcctaagtggcgggttataattatattatgtgtggtgccttagtggc-ggatttagtctgcatttccatgat 30910226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 42861832 - 42861871
Alignment:
179 cattttcatgatcatgcatggcatatgcatctgtgtggcg 218  Q
    ||||||||||||||||||| ||||||||||||||||||||    
42861832 cattttcatgatcatgcatagcatatgcatctgtgtggcg 42861871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 6309083 - 6309132
Alignment:
96 cttagtggcgg-ttataattatattctgtgtggtgccttagtggcgggtt 144  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||    
6309083 cttagtggcgggttactattatattctgtgtggtgccttagtggcgggtt 6309132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 38001478 - 38001509
Alignment:
221 ttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||||||||||||||||||||||||||||||    
38001478 ttagtggcgggaattgcaattatattctgtgt 38001509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 27026850 - 27026899
Alignment:
93 tgccttagtggcgg--ttataattatattctgtgtgg-tgccttagtggc 139  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||||    
27026850 tgccttagtggcgggattataattatattctgtgtggatgccttagtggc 27026899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 537315 - 537343
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
537315 gccttagtggcgggaattgcaattatatt 537343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 6309064 - 6309096
Alignment:
112 attatattctgtgtggtgccttagtggcgggtt 144  Q
    |||||||||||||||||| ||||||||||||||    
6309064 attatattctgtgtggtgtcttagtggcgggtt 6309096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 55162427 - 55162582
Alignment:
11 aagagaaagatgaaaatgtgagtttgtgaaatgatggacttttgg-ttgtgtgtttgatgatgcattaatatttgagtgtaattgccttagtggc-ggtt 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| || | ||||||||| |||||||| ||||    
55162427 aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaatacttaactgtaattgcattagtggcgggtt 55162526  T
109 ataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
     | |||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||    
55162527 gtgattatattctgtgtggtgccttggtgacggattttagtctgcattttcatgat 55162582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 28969164 - 28969072
Alignment:
1 aattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttggttgtgtgtttgatgatgcattaatatttgagtgtaatt 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  |||||||||||||||||||    
28969164 aattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggttgtgtgtttcatgatgagttaatatttgagtgtaatt 28969072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 55162561 - 55162644
Alignment:
169 ttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
55162561 ttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtgt 55162644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 28969044 - 28968955
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcat-----atgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    |||||||||||||||||||||||||||||||||||     |||||||||||||| ||||||||||||||||||||||||||||| |||||    
28969044 gttttaatctgcattttcatgatcatgcatggcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattttgtgt 28968955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 40459366 - 40459437
Alignment:
177 tgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||    
40459366 tgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 40459437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 13652950 - 13653025
Alignment:
177 tgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||||||||||| |||||    
13652950 tgcattttcatgatcatgcatggtatatgcatttgtgtggtgccttagtggcgagaattgcaattatattttgtgt 13653025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 13661075 - 13661150
Alignment:
177 tgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||||||||||| |||||    
13661075 tgcattttcatgatcatgcatggtatatgcatttgtgtggtgccttagtggcgagaattgcaattatattttgtgt 13661150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 40459210 - 40459288
Alignment:
29 tgagtttgtgaaatgatggacttttggtt-gtgtgtttgatgatgcattaatatttgagtgtaattgccttagtggcgg 106  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||    
40459210 tgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaatacttgaatgtaattgccttagtggcgg 40459288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 28969076 - 28969022
Alignment:
110 taattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
28969076 taattatattctgtgtggtgccttagtggtaggttttaatctgcattttcatgat 28969022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 2761849 - 2761801
Alignment:
179 cattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtgg 227  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||    
2761849 cattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtgg 2761801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 40459307 - 40459379
Alignment:
93 tgccttagtggcgg-ttataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||   ||||||||||||||    
40459307 tgcctaagtggcgggttataattatattctatgttgtgccttagtggcgggttttaggttgcattttcatgat 40459379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 55162638 - 55162682
Alignment:
208 tctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
55162638 tctgtgtggtgccttagtggcgggaattgcaattatattctgtgt 55162682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 69782 - 69833
Alignment:
180 attttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcggg 231  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
69782 attttcatgatcatgcatggcatatgcatctgtgtggtgcctgtgtggcggg 69833  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 69712 - 69764
Alignment:
93 tgccttagtggcgg-ttataattatattctgtgtggtgccttagtggcgggtt 144  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||||||||    
69712 tgccttagtggcgggttacgattatattctgtgtggtgccttagtggcgggtt 69764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 69696 - 69728
Alignment:
112 attatattctgtgtggtgccttagtggcgggtt 144  Q
    |||||||||||||||||||||||||||||||||    
69696 attatattctgtgtggtgccttagtggcgggtt 69728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 142
Target Start/End: Original strand, 55162630 - 55162661
Alignment:
111 aattatattctgtgtggtgccttagtggcggg 142  Q
    ||||||||||||||||||||||||||||||||    
55162630 aattatattctgtgtggtgccttagtggcggg 55162661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 13653032 - 13653064
Alignment:
220 cttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||||||||| |||||||||||||||||||||    
13653032 cttagtggcggaaattgcaattatattctgtgt 13653064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 13661157 - 13661189
Alignment:
220 cttagtggcgggaattgcaattatattctgtgt 252  Q
    ||||||||||| |||||||||||||||||||||    
13661157 cttagtggcggaaattgcaattatattctgtgt 13661189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 40459446 - 40459474
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
40459446 gccttagtggcgggaattgcaattatatt 40459474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 55162687 - 55162715
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
55162687 gccttagtggcgggaattgcaattatatt 55162715  T

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Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 41958222 - 41958138
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
41958222 gttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtgt 41958138  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 44436310 - 44436463
Alignment:
1 aattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttggttgtgtgtttgatgatgcattaatatt-----tgagtgtaattgc 95  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||| ||||||||  ||||||||||||||||| ||||||||     |  ||||   ||     
44436310 aattaaagaaaaaagaaagatgaaaacgtgagattgtgaaatgattgacttttgcctgtgtgtttgatgatgcgttaatattatatatccgtgt-ggtgt 44436408  T
96 cttagtggc-ggttataattatattctgtgtggtgccttagtggcgggttttaat 149  Q
    |||||| || |||||||||||||||||||||||||||||||| ||||||| ||||    
44436409 cttagttgcgggttataattatattctgtgtggtgccttagttgcgggttataat 44436463  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 44436478 - 44436550
Alignment:
93 tgccttagtggcgg-ttataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||    
44436478 tgccttagttgcgggttataattatattctgtgtggtgccttagtggtgggttttagtctctattttcatgat 44436550  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 22635772 - 22635730
Alignment:
179 cattttcatgatcatgcatggcatatgcatctgtgtggcgcct 221  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
22635772 cattttcatgatcatgcatggcatatgcatctgtgtggtgcct 22635730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 44436442 - 44436499
Alignment:
93 tgccttagtggcgg-ttataattatattctgtgtggtgccttagtggcgggttttaat 149  Q
    ||||||||| |||| |||||||||||||||||||||||||||||| ||||||| ||||    
44436442 tgccttagttgcgggttataattatattctgtgtggtgccttagttgcgggttataat 44436499  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 44436540 - 44436592
Alignment:
180 attttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcggga 232  Q
    |||||||||||||||| |||||||||||||||||||| ||||  |||||||||    
44436540 attttcatgatcatgcttggcatatgcatctgtgtggtgcctgtgtggcggga 44436592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 22816064 - 22816031
Alignment:
180 attttcatgatcatgcatggcatatgcatctgtg 213  Q
    ||||||||||||||||||||||||||||||||||    
22816064 attttcatgatcatgcatggcatatgcatctgtg 22816031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 22635841 - 22635789
Alignment:
93 tgccttagtggc-ggttataattatattctgtgtggtgccttagtggcgggtt 144  Q
    |||||||||||| ||||  |||||||||||||||||||||| |||||||||||    
22635841 tgccttagtggcaggttgcaattatattctgtgtggtgcctcagtggcgggtt 22635789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 22816136 - 22816082
Alignment:
93 tgccttagtggcg---gttataattatattctgtgtggtgccttagtggcgggtt 144  Q
    |||||||||||||   |||| ||||||||| ||||||||||||||||||||||||    
22816136 tgccttagtggcgcgggttacaattatattatgtgtggtgccttagtggcgggtt 22816082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 3189179 - 3189142
Alignment:
179 cattttcatgatcatgcatggcatatgcatctgtgtgg 216  Q
    |||||||||||||||||||| ||||||||| |||||||    
3189179 cattttcatgatcatgcatgacatatgcatttgtgtgg 3189142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 40841276 - 40841215
Alignment:
170 tttaatctgcattttcatgatcatgcatg-gcatatgcatctgtgtggcgccttagtggcgg 230  Q
    |||| ||| |||||||||||||||||||  |||||||||||||||||| ||||  |||||||    
40841276 tttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgg 40841215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 22816197 - 22816161
Alignment:
108 tataattatattctgtgtggtgccttagtggcgggtt 144  Q
    ||||||||| ||||||||||||||| |||||||||||    
22816197 tataattattttctgtgtggtgcctaagtggcgggtt 22816161  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 23260414 - 23260330
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
23260414 gttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattttgtgt 23260330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 10751360 - 10751280
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
10751360 gttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattacaattatattct 10751280  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 34636593 - 34636673
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||| | |||||||||||| || |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
34636593 gttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 34636673  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 32450016 - 32449954
Alignment:
170 tttaatctgcattttcatgatcatgca-tggcatatgcatctgtgtggcgccttagtggcggg 231  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||| ||||  ||||||||    
32450016 tttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 32449954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 10751375 - 10751338
Alignment:
127 gtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||||||||||||||||||| ||||||||||||||||    
10751375 gtgccttagtggcgggttttagtctgcattttcatgat 10751338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 13773172 - 13773121
Alignment:
179 cattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgg 230  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||  |||||||    
13773172 cattttcatgatcatgcatagcatatacatctgtgtggtgcctgtgtggcgg 13773121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 23260325 - 23260297
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
23260325 gccttagtggcgggaattgcaattatatt 23260297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 34636682 - 34636710
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
34636682 gccttagtggcgggaattgcaattatatt 34636710  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 5004520 - 5004440
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
5004520 gttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattct 5004440  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 7336494 - 7336414
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
7336494 gttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattct 7336414  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 16975726 - 16975810
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
16975726 gttttagtctgcattttcatgatcatccatggcatatgcatctgtgtggtgccatagtggcgggaattgcaattatattctgtgt 16975810  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 43277834 - 43277762
Alignment:
180 attttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattctgtgt 252  Q
    |||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
43277834 attttcatgatcatacatgacatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtgt 43277762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 46404401 - 46404321
Alignment:
168 gttttaatctgcattttcatgatcatgcatggcatatgcatctgtgtggcgccttagtggcgggaattgcaattatattct 248  Q
    |||||| | |||||||||||| |  |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
46404401 gttttagtgtgcattttcatgtttgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 46404321  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 7336531 - 7336472
Alignment:
105 ggttataattatattctgtgtggtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
7336531 ggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgat 7336472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 5004535 - 5004498
Alignment:
127 gtgccttagtggcgggttttaatctgcattttcatgat 164  Q
    ||||||||||||||||||||| ||||||||||||||||    
5004535 gtgccttagtggcgggttttagtctgcattttcatgat 5004498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 17542494 - 17542462
Alignment:
112 attatattctgtgtggtgccttagtggcgggtt 144  Q
    |||||||||||||||||||||||||||||||||    
17542494 attatattctgtgtggtgccttagtggcgggtt 17542462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 5004431 - 5004403
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
5004431 gccttagtggcgggaattgcaattatatt 5004403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 7336405 - 7336377
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
7336405 gccttagtggcgggaattgcaattatatt 7336377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 9104588 - 9104640
Alignment:
170 tttaatctgcattttcatgatcatgca-tggcatatgcatctgtgtggcgcct 221  Q
    |||| ||| |||||||||||||||||| | |||||||||||||||||| ||||    
9104588 tttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcct 9104640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 16975815 - 16975843
Alignment:
218 gccttagtggcgggaattgcaattatatt 246  Q
    |||||||||||||||||||||||||||||    
16975815 gccttagtggcgggaattgcaattatatt 16975843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 33248 - 33202
Alignment:
11 aagagaaagatgaaaatgtgagtttgtgaaatgatggacttttggtt 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
33248 aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtt 33202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 33078 - 33038
Alignment:
181 ttttcatgatcatgcatggcatatgcatctgtgtggcgcct 221  Q
    ||||||| |||||||||| ||||||||||||||||| ||||    
33078 ttttcattatcatgcatgacatatgcatctgtgtggtgcct 33038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 242894 - 242844
Alignment:
93 tgccttagtggc-ggttataattatattctgtgtggtgccttagtggcggg 142  Q
    |||||||||||| |||||  |||||||||||||||||||||| ||||||||    
242894 tgccttagtggcaggttactattatattctgtgtggtgccttcgtggcggg 242844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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