View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_high_22 (Length: 255)
Name: NF4676_high_22
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 19240193 - 19239953
Alignment:
| Q |
1 |
cgaagaacaatctagctgaatcaacatcacccactttcccataacctgagatcatcacactccaagaaaccacatttaagctaggaatttcatcaaacac |
100 |
Q |
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| T |
19240193 |
cgaagaacaatctagccgaatcaacatcacccactttcgcataacccgagatcatcacactccaagaaaccacatttaagctaggaatttcatcaaacac |
19240094 |
T |
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| Q |
101 |
gtaccgtgcagctaccacatcaccaaaaacacagtacatcgccatcaaactattacccacatagatatcaaaaacaagacccaatttcgaactataccca |
200 |
Q |
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| T |
19240093 |
gtaccgtgcagctaccacatcgccaaaaacacagtacattgccatcaaactattacccacatagatatcaaacaccagacccaattttgaactataccca |
19239994 |
T |
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| Q |
201 |
tgaatcattttccctaaagaacaatcatgaaatgttccaca |
241 |
Q |
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| T |
19239993 |
tgaatcattttcccaaaagaacaatcatgaaatgttccaca |
19239953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 19243224 - 19243132
Alignment:
| Q |
1 |
cgaagaacaatctagctgaatcaacatcacccactttcccataacctgagatcatcacactccaagaaaccacatttaagctaggaatttcat |
93 |
Q |
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||||||||||| |||| ||||||||||||||||||||| ||| | || |||||||||||||||||||| || ||||| |||||||||||| |
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| T |
19243224 |
cgaagaacaatttagccgaatcaacatcacccactttcgtatattcagaaatcatcacactccaagaaactgcacttaagttaggaatttcat |
19243132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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