View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_high_27 (Length: 216)
Name: NF4676_high_27
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 28597473 - 28597437
Alignment:
| Q |
161 |
tgactcttacgcttcaagcctttgaatctgattagca |
197 |
Q |
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| T |
28597473 |
tgactcttacgcttcaagcctttgaatctgattagca |
28597437 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 191
Target Start/End: Original strand, 9233077 - 9233106
Alignment:
| Q |
162 |
gactcttacgcttcaagcctttgaatctga |
191 |
Q |
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| T |
9233077 |
gactcttacgcttcaagcctttgaatctga |
9233106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 9280908 - 9280875
Alignment:
| Q |
162 |
gactcttacgcttcaagcctttgaatctgattag |
195 |
Q |
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| T |
9280908 |
gactcttacgcttcaagcctttggatctgattag |
9280875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 9291879 - 9291846
Alignment:
| Q |
162 |
gactcttacgcttcaagcctttgaatctgattag |
195 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
9291879 |
gactcttacgcttcaagcctttggatctgattag |
9291846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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