View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4676_high_4 (Length: 441)

Name: NF4676_high_4
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4676_high_4
NF4676_high_4
[»] chr4 (16 HSPs)
chr4 (41-233)||(50551482-50551676)
chr4 (167-233)||(54316059-54316125)
chr4 (166-233)||(7061976-7062043)
chr4 (172-227)||(24673957-24674012)
chr4 (172-233)||(17914978-17915039)
chr4 (166-233)||(9551455-9551522)
chr4 (167-229)||(3556371-3556433)
chr4 (172-233)||(50544266-50544327)
chr4 (177-233)||(21785928-21785984)
chr4 (166-233)||(5465857-5465924)
chr4 (191-233)||(5466079-5466121)
chr4 (191-233)||(4402063-4402106)
chr4 (166-233)||(11789863-11789930)
chr4 (166-233)||(23655298-23655365)
chr4 (175-233)||(42475889-42475947)
chr4 (166-219)||(35256146-35256199)
[»] chr8 (12 HSPs)
chr8 (166-233)||(43801474-43801541)
chr8 (172-233)||(6911039-6911100)
chr8 (166-233)||(15009088-15009155)
chr8 (172-233)||(14999181-14999242)
chr8 (166-230)||(16324848-16324912)
chr8 (166-233)||(43801701-43801768)
chr8 (172-233)||(8489383-8489444)
chr8 (172-229)||(16325080-16325137)
chr8 (190-233)||(6911259-6911302)
chr8 (178-229)||(41722061-41722112)
chr8 (179-233)||(22781072-22781126)
chr8 (172-230)||(41403993-41404051)
[»] chr7 (12 HSPs)
chr7 (172-233)||(35207405-35207466)
chr7 (172-230)||(19318157-19318215)
chr7 (176-233)||(35207192-35207249)
chr7 (173-229)||(29474646-29474702)
chr7 (172-230)||(39983870-39983928)
chr7 (166-230)||(19318452-19318516)
chr7 (166-230)||(25048257-25048321)
chr7 (167-233)||(6408484-6408551)
chr7 (166-233)||(19318378-19318445)
chr7 (166-233)||(35363322-35363389)
chr7 (166-233)||(3740647-3740714)
chr7 (172-233)||(2834429-2834490)
[»] chr5 (8 HSPs)
chr5 (166-233)||(17370071-17370138)
chr5 (172-233)||(14076899-14076960)
chr5 (166-233)||(31193969-31194036)
chr5 (166-233)||(31194195-31194262)
chr5 (166-233)||(8754662-8754729)
chr5 (174-233)||(36955524-36955583)
chr5 (172-230)||(32347130-32347188)
chr5 (174-230)||(36955315-36955371)
[»] chr2 (14 HSPs)
chr2 (166-233)||(4371458-4371525)
chr2 (166-233)||(22563214-22563281)
chr2 (166-233)||(22563440-22563507)
chr2 (172-233)||(12232573-12232634)
chr2 (166-230)||(29893030-29893094)
chr2 (166-233)||(17200082-17200149)
chr2 (172-233)||(21265573-21265634)
chr2 (176-233)||(34645776-34645833)
chr2 (166-233)||(34645551-34645618)
chr2 (176-233)||(17200308-17200364)
chr2 (172-233)||(20296646-20296707)
chr2 (172-233)||(21265792-21265853)
chr2 (172-233)||(20296272-20296333)
chr2 (195-231)||(4682789-4682825)
[»] chr3 (11 HSPs)
chr3 (166-231)||(38500053-38500118)
chr3 (166-233)||(4041413-4041480)
chr3 (166-233)||(8799321-8799388)
chr3 (166-233)||(38499823-38499890)
chr3 (167-233)||(53197213-53197279)
chr3 (172-233)||(43797362-43797423)
chr3 (172-230)||(43797585-43797643)
chr3 (199-233)||(46883452-46883486)
chr3 (195-233)||(46883642-46883680)
chr3 (172-233)||(29828911-29828972)
chr3 (193-233)||(43797871-43797911)
[»] chr1 (16 HSPs)
chr1 (166-233)||(24882975-24883042)
chr1 (166-233)||(33400859-33400926)
chr1 (166-231)||(3385543-3385608)
chr1 (172-233)||(33156684-33156745)
chr1 (166-233)||(24883198-24883265)
chr1 (166-233)||(27171803-27171870)
chr1 (163-230)||(49777056-49777123)
chr1 (166-227)||(33156460-33156520)
chr1 (166-231)||(49776823-49776888)
chr1 (166-233)||(3385312-3385379)
chr1 (172-233)||(5771918-5771979)
chr1 (166-231)||(34969989-34970054)
chr1 (166-233)||(34622555-34622622)
chr1 (200-233)||(13946960-13946993)
chr1 (172-233)||(33401086-33401147)
chr1 (195-231)||(13947154-13947190)
[»] chr6 (3 HSPs)
chr6 (166-233)||(16125526-16125593)
chr6 (166-233)||(22748592-22748659)
chr6 (172-231)||(22748820-22748879)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 50551676 - 50551482
Alignment:
Q  41 gagggtatagggtgtggttgggttaggaaccatatgtgattgaacgtattgtactccggttgattc--tactttatttctttctcctgttgttcagctat 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||  ||||||  ||||||| || |||||||||||||    
T  50551676 gagggtatagggtgtggttgggttaggaaccatatgtgattgaacatattgtactccagttgattccctactttgcttctttccccagttgttcagctat 50551577  T
Q  139 gactatttttgggttggcgtattggagtcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||||  |||||||||||||| ||||||||    
T  50551576 gactatttttgggttggcgcattggagtggggtatgctccatttaggctaaactttatttactccatttaaggtttggatgtaagatatgtggca 50551482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 54316125 - 54316059
Alignment:
Q  167 cgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  54316125 cgggtatgctccatttaggctaagctctatttactccatttagggtttggatgcaagacatgtggca 54316059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 7061976 - 7062043
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||    
T  7061976 tcgggtatgctccatttaggctaacctctatttactccatttatggtttggatgcaagacatgtggca 7062043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 24674012 - 24673957
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacat 227  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  24674012 atgctccatttaggctaaacttcatttactctatttagagtttggatgtaagacat 24673957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 17915039 - 17914978
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||||||||||  || |||||||||||||| |||||||||| |||||||||||||    
T  17915039 atgctccatttaggctaagttccatttactccatttaaagtttggatgcaagacatgtggca 17914978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 9551522 - 9551455
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||| | ||||||| ||||||| |||||    
T  9551522 tcgggtatgctccatttagactaaactccatttactccatttagggcttggatggaagacatttggca 9551455  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 3556371 - 3556433
Alignment:
Q  167 cgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgt 229  Q
    ||||||||||||||||| ||||||||  ||||||||||||||  ||||||||| |||||||||    
T  3556371 cgggcatgctccatttaagctaaacttcatttactccatttaaggtttggatgcaagacatgt 3556433  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 50544266 - 50544327
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||||||||| ||| ||||| || |||||| ||||||||| |||||||||||||    
T  50544266 atgctccatttaggctaagctccatttattctatttagggtttggatgcaagacatgtggca 50544327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 21785984 - 21785928
Alignment:
Q  177 ccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| |  ||||||||||    
T  21785984 ccatttaggctaagctccatttactccatttagagtttggatgcattacatgtggca 21785928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 5465857 - 5465924
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| ||||||||||||||||||  |  ||||||| ||||||| |||| ||||||||||||||||||    
T  5465857 tcgggtatgctccatttaggctaagtttcatttacttcatttagggtttagatgtaagacatgtggca 5465924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 5466121 - 5466079
Alignment:
Q  191 ctctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  5466121 ctctatttactctatttagggtttggatgtaagacatgtggca 5466079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 4402063 - 4402106
Alignment:
Q  191 ctctatttactccatttag-agtttggatgtaagacatgtggca 233  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  4402063 ctctatttaatccatttaggagtttggatgtaagacatgtggca 4402106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 11789863 - 11789930
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| ||||||||||||||| || ||  ||||||||||||||| |||| |||| |||| ||||||||    
T  11789863 tcgggtatgctccatttaggcaaagcttcatttactccatttagggtttagatgcaagatatgtggca 11789930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 23655365 - 23655298
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||| ||| ||  ||||| ||||||||| |||| |||| |||||||||||||    
T  23655365 tcgggtatgctccatttaggttaagcttcatttattccatttagggtttagatgcaagacatgtggca 23655298  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 42475889 - 42475947
Alignment:
Q  175 ctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||||||| ||  |||||||| |||||| ||||||||| |||||| ||||||    
T  42475889 ctccatttaggctaagcttcatttactctatttagggtttggatgcaagacacgtggca 42475947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 35256146 - 35256199
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatg 219  Q
    ||||| |||||| |||||| |||| ||  |||||||||||||||||||||||||    
T  35256146 tcgggtatgctctatttagactaagctgcatttactccatttagagtttggatg 35256199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 43801474 - 43801541
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  43801474 tcgggtatgcttcatttaggctaaacttcatttactccatttagagtttggatgtaagacatgtggca 43801541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 6911039 - 6911100
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  6911039 atgctccatttaggctaagctccatttactccatttagggtttggatgtaagacatgtggca 6911100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 15009155 - 15009088
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||    
T  15009155 tcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgtaagacatgtggca 15009088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 14999181 - 14999242
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||    
T  14999181 atgctccatttaggctaagctcaatttactccatttagggtttggatgcaagacatgtggca 14999242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 16324848 - 16324912
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtg 230  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||| ||||||||||    
T  16324848 tcgggcatgctccatttaggctaagctcaatttaatccatttagggtttggatgcaagacatgtg 16324912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 43801768 - 43801701
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| ||| |||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||||||    
T  43801768 tcgggtatgttccatttaggctaagctccatttactccatttagagtttggatgcaagatatgtggca 43801701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 8489383 - 8489444
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||||| ||| ||  ||||| ||||||||| |||||||||||||||||||||||    
T  8489383 atgctccatttaggttaagcttcatttattccatttagggtttggatgtaagacatgtggca 8489444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 16325137 - 16325080
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgt 229  Q
    ||||| |||||| || |||||| ||||||||||||||| ||||||||| |||||||||    
T  16325137 atgcttcatttaagccaaactccatttactccatttagggtttggatgcaagacatgt 16325080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 6911302 - 6911259
Alignment:
Q  190 actctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||    
T  6911302 actccatttactccatttagggtttggatgcaagacatgtggca 6911259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 41722112 - 41722061
Alignment:
Q  178 catttaggctaaactctatttactccatttagagtttggatgtaagacatgt 229  Q
    |||||||||||| |||||||||||  |||||||| ||||||| |||||||||    
T  41722112 catttaggctaagctctatttactttatttagagcttggatgcaagacatgt 41722061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 22781072 - 22781126
Alignment:
Q  179 atttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||||||  |||||||||||| || ||||||||| ||| |||||||||    
T  22781072 atttaggctaaacttcatttactccattcagggtttggatgcaaggcatgtggca 22781126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 41404051 - 41403993
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtg 230  Q
    |||||||||||||| |||  || |||||||| |||||| ||||||||| ||||||||||    
T  41404051 atgctccatttaggttaagttcaatttactctatttagggtttggatgcaagacatgtg 41403993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 35207466 - 35207405
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  35207466 atgctccatttaggctaaactccatttactccatttagggtttggatgcaagacatgtggca 35207405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 19318157 - 19318215
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtg 230  Q
    |||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||    
T  19318157 atgctccatttaggttaagcgccatttactccatttagagtttggatgtaagacatgtg 19318215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 35207192 - 35207249
Alignment:
Q  176 tccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||    
T  35207192 tccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggca 35207249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 29474702 - 29474646
Alignment:
Q  173 tgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgt 229  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||    
T  29474702 tgctccatttaggctaaactccatttactctatttagagcttggatgcaagacatgt 29474646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 39983928 - 39983870
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtg 230  Q
    ||||||||||||||| || ||| ||||||||||||||| ||||||||| ||||||||||    
T  39983928 atgctccatttaggcgaagctccatttactccatttagggtttggatgcaagacatgtg 39983870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 19318516 - 19318452
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtg 230  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||  |||| |||| ||||||||||    
T  19318516 tcgggtatgctccatttaggctaagctccatttactccatttaaggtttagatgcaagacatgtg 19318452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 25048321 - 25048257
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtg 230  Q
    ||||| |||||||||||||||||| ||| ||||||| |||||||  |||||||| ||||||||||    
T  25048321 tcgggtatgctccatttaggctaagctccatttacttcatttaggatttggatgcaagacatgtg 25048257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 6408551 - 6408484
Alignment:
Q  167 cgggcatgctccatttaggctaaact-ctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||| |||||||||||||| |||||| || |||||| ||||||| ||||||||| |||||||||||||    
T  6408551 cgggtatgctccatttaggttaaacttctttttacttcatttagggtttggatgcaagacatgtggca 6408484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 19318445 - 19318378
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||| ||  ||||||||||||||  |||| |||| |||||||||||||    
T  19318445 tcgggtatgctccatttaggctaagcttcatttactccatttaaggtttagatgcaagacatgtggca 19318378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 35363322 - 35363389
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| ||||||||||||||||||  |  |||||||||||||||||||| |||| || ||||||||||    
T  35363322 tcgggtatgctccatttaggctaagtttcatttactccatttagagtttagatgcaacacatgtggca 35363389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 3740647 - 3740714
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||| ||||||| |||||| |||||| ||||||||  |||||||||||||| ||| ||||    
T  3740647 tcgggtatgctcaatttaggttaaactttatttattccatttaaggtttggatgtaagatatgcggca 3740714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 2834490 - 2834429
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||||||||||  || ||||| ||||||||| ||||||||  || ||||||||||    
T  2834490 atgctccatttaggctaagttccatttattccatttagggtttggatacaaaacatgtggca 2834429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 17370071 - 17370138
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  17370071 tcgggtatgctccatttatgctaaactccatttactccatttagggtttggatgcaagacatgtggca 17370138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 14076960 - 14076899
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||| |||||||||||||    
T  14076960 atgctccatttaggctaagttctatttactccatttagggtttggatgcaagacatgtggca 14076899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 31193969 - 31194036
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||  ||||||||| |||||||||||||    
T  31193969 tcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggca 31194036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 31194262 - 31194195
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||  ||||||||| |||||||||||||    
T  31194262 tcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggca 31194195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 8754662 - 8754729
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| || |||||||||| |||||||| |||||||| |||||| ||||||||| |||||||||||||    
T  8754662 tcgggtatcctccatttagactaaactccatttactctatttagggtttggatggaagacatgtggca 8754729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 36955583 - 36955524
Alignment:
Q  174 gctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||||||| |||||||||||| |||||| |||||| || |||||||||||||    
T  36955583 gctccatttaggctaagctctatttactctatttagggtttggttgcaagacatgtggca 36955524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 32347188 - 32347130
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtg 230  Q
    |||||||||||||||||| ||| | ||||||||||||  ||||||||||||||||||||    
T  32347188 atgctccatttaggctaagctccaattactccatttaaggtttggatgtaagacatgtg 32347130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 36955315 - 36955371
Alignment:
Q  174 gctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtg 230  Q
    |||||||||||||||| ||  ||||||||||||||| ||||||||| ||||||||||    
T  36955315 gctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtg 36955371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 4371458 - 4371525
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||    
T  4371458 tcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggca 4371525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 22563214 - 22563281
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||    
T  22563214 tcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggca 22563281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 22563507 - 22563440
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||||||| |||||||||||||||  |||||||| |||||||||||||    
T  22563507 tcgggtatgctccatttaggctaaactccatttactccatttaggatttggatgcaagacatgtggca 22563440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 12232573 - 12232634
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||||||||| ||| |||||||| |||||| |||||||||||||||||||||||    
T  12232573 atgctccatttaggctaagctccatttactctatttagggtttggatgtaagacatgtggca 12232634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 29893094 - 29893030
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtg 230  Q
    ||||| |||||||||||||||||| |||||||||||| |||||| ||||||||| ||||||||||    
T  29893094 tcgggtatgctccatttaggctaagctctatttactctatttagggtttggatgcaagacatgtg 29893030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 17200082 - 17200149
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| ||||||||||||||| || ||| |||||||||||||||  ||||||||||||||||||||||    
T  17200082 tcgggtatgctccatttaggcaaagctccatttactccatttaggatttggatgtaagacatgtggca 17200149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 21265573 - 21265634
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||||| |||| ||| ||||||||||||||| ||||||||| |||||||||||||    
T  21265573 atgctccatttagactaagctcaatttactccatttagggtttggatgcaagacatgtggca 21265634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 34645833 - 34645776
Alignment:
Q  176 tccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||    
T  34645833 tccatttaggcttaactccatttattccatttagggtttggatgtaagacatgtggca 34645776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 34645551 - 34645618
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||| ||||||| |||  |||||||||||||||||| || |||||| |||||||||||||    
T  34645551 tcgggtatgctctatttaggttaagttctatttactccatttagggtatggatgcaagacatgtggca 34645618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 17200364 - 17200308
Alignment:
Q  176 tccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||| |||| ||| ||||||||||||||  |||||||||||||||||||||||    
T  17200364 tccatttag-ctaagctccatttactccatttaaggtttggatgtaagacatgtggca 17200308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 20296707 - 20296646
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||| ||||||||||| ||| ||||||||||||||    |||||||||||||||||||||    
T  20296707 atgctctatttaggctaagctccatttactccatttaagaattggatgtaagacatgtggca 20296646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 21265853 - 21265792
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||| ||||| ||||| ||| |||||||| |||||| ||||||||| |||||||||||||    
T  21265853 atgctctatttaagctaagctccatttactctatttagggtttggatgcaagacatgtggca 21265792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 20296272 - 20296333
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||| ||||||  || ||||||| ||||||| ||||||||| ||||||| |||||    
T  20296272 atgctccattttggctaagatccatttacttcatttagggtttggatgaaagacatatggca 20296333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 4682789 - 4682825
Alignment:
Q  195 atttactccatttagagtttggatgtaagacatgtgg 231  Q
    |||||||||||||||||||| |||| |||||||||||    
T  4682789 atttactccatttagagtttagatgcaagacatgtgg 4682825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 38500118 - 38500053
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtgg 231  Q
    ||||| |||||||||||||||||| ||| |||||||||| |||| |||||||||||||||||||||    
T  38500118 tcgggtatgctccatttaggctaagctccatttactccaattagggtttggatgtaagacatgtgg 38500053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 4041480 - 4041413
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||||||||||    
T  4041480 tcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtggca 4041413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 8799321 - 8799388
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||  ||| ||||||||||||||| ||||||||| |||||||||||||    
T  8799321 tcgggtatgctccatttaggctaggctccatttactccatttagggtttggatgcaagacatgtggca 8799388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 38499823 - 38499890
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||| ||||||||  |||||||||||||    
T  38499823 tcgggtatgctccatttaggctaagctccatttactccatttagggtttggatacaagacatgtggca 38499890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 53197279 - 53197213
Alignment:
Q  167 cgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||| |||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||||||||||    
T  53197279 cgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtggca 53197213  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 43797362 - 43797423
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||||||||| ||| ||||||||||||||  ||||||||| |||||||||||||    
T  43797362 atgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggca 43797423  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 43797643 - 43797585
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtg 230  Q
    ||||||||||||||||||  || |||||||| |||||| ||||||||| ||||||||||    
T  43797643 atgctccatttaggctaagatccatttactctatttagggtttggatgaaagacatgtg 43797585  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 46883452 - 46883486
Alignment:
Q  199 actccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||| |||||||||||||||||||||||    
T  46883452 actccatttagggtttggatgtaagacatgtggca 46883486  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 46883680 - 46883642
Alignment:
Q  195 atttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  46883680 atttactccatttagggtttggatgcaagacatgtggca 46883642  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 29828972 - 29828911
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||| ||||| ||||| ||| ||||| |||||||||  ||||||||||||| ||||||||    
T  29828972 atgctctatttaagctaagctccatttattccatttaggatttggatgtaagatatgtggca 29828911  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 43797911 - 43797871
Alignment:
Q  193 ctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||||||||| | ||||||| |||||||||||||    
T  43797911 ctatttactccatttagggcttggatgcaagacatgtggca 43797871  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 24882975 - 24883042
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||| ||||||||| |||||| ||||||    
T  24882975 tcgggtatgctccatttaggctaatctccatttactccatttagggtttggatgcaagacacgtggca 24883042  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 33400859 - 33400926
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||  ||||||||||||| |||||||||    
T  33400859 tcgggcatgctccatttaagctaagctccatttactccatttaaggtttggatgtaaggcatgtggca 33400926  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 3385608 - 3385543
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtgg 231  Q
    ||||| ||||||||||||||| || ||| ||||||||||||||| |||||||||||||| ||||||    
T  3385608 tcgggtatgctccatttaggccaagctccatttactccatttagggtttggatgtaagatatgtgg 3385543  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 33156745 - 33156684
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||||||||||| || |||||||||||||||| ||||||||  |||||||||||||    
T  33156745 atgctccatttaggctaagctttatttactccatttagggtttggatacaagacatgtggca 33156684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 24883265 - 24883198
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| ||| |||||||||||||| ||| ||||||||||||||| ||||||||| |||| ||||||||    
T  24883265 tcgggtatgttccatttaggctaagctccatttactccatttagggtttggatgcaagatatgtggca 24883198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 27171803 - 27171870
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| ||||| |||||||||||| ||  ||||||||||||||  |||||||||||||||||||||||    
T  27171803 tcgggtatgcttcatttaggctaagcttcatttactccatttatggtttggatgtaagacatgtggca 27171870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 49777123 - 49777056
Alignment:
Q  163 gagtcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtg 230  Q
    ||||| || |||||||||||||||||||||| ||||| || |||||| ||||||||| ||||||||||    
T  49777123 gagtccggtatgctccatttaggctaaactccatttattctatttagggtttggatgcaagacatgtg 49777056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 33156460 - 33156520
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacat 227  Q
    ||||| |||||||||| ||||||  ||| |||||||||||||||||||||||||||||||||    
T  33156460 tcgggtatgctccatt-aggctaggctccatttactccatttagagtttggatgtaagacat 33156520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 49776823 - 49776888
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtgg 231  Q
    ||||| |||||||||||| ||||| || ||||||||||||||||  |||||||| |||||||||||    
T  49776823 tcgggtatgctccatttaagctaagctttatttactccatttaggatttggatgcaagacatgtgg 49776888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 3385312 - 3385379
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| ||||| |||||||||||| ||   ||||| |||||||| |||||||||||||||||||||||    
T  3385312 tcgggtatgcttcatttaggctaagcttcgtttaccccatttagggtttggatgtaagacatgtggca 3385379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 5771918 - 5771979
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||||||||||| |||| ||  ||||||||||||||||||||| |||||||| || |||||    
T  5771918 atgctccatttagactaagcttcatttactccatttagagtttgaatgtaagatatatggca 5771979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 34969989 - 34970054
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtgg 231  Q
    ||||| ||||| |||||||| ||||||| |||||||| ||||||  |||||||| |||||||||||    
T  34969989 tcgggtatgcttcatttaggttaaactccatttactcaatttaggatttggatgcaagacatgtgg 34970054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 34622622 - 34622555
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| ||||||||||||| |||| ||| | ||||||||||||  ||||| ||| |||||||||||||    
T  34622622 tcgggtatgctccatttagactaagctccagttactccatttaaggtttgaatgcaagacatgtggca 34622555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 13946960 - 13946993
Alignment:
Q  200 ctccatttagagtttggatgtaagacatgtggca 233  Q
    |||||||||| |||||||||||||||||||||||    
T  13946960 ctccatttagggtttggatgtaagacatgtggca 13946993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 33401147 - 33401086
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||| ||| |||||||  |||||  |||| ||||||||||||||||||    
T  33401147 atgctacatttaggctaagctcaatttactttatttaaggtttagatgtaagacatgtggca 33401086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 13947190 - 13947154
Alignment:
Q  195 atttactccatttagagtttggatgtaagacatgtgg 231  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  13947190 atttattccatttagcgtttggatgtaagacatgtgg 13947154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 16125526 - 16125593
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||||||||||||||||||  ||||| | ||||||| ||||||||| |||||||||||||    
T  16125526 tcgggtatgctccatttaggctaaacttcatttatttcatttagggtttggatgcaagacatgtggca 16125593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 22748592 - 22748659
Alignment:
Q  166 tcgggcatgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtggca 233  Q
    ||||| |||||| ||||||||||  ||| ||||||||||||||   |||||||| |||||||||||||    
T  22748592 tcgggtatgctcaatttaggctatgctccatttactccatttaagatttggatgcaagacatgtggca 22748659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 22748879 - 22748820
Alignment:
Q  172 atgctccatttaggctaaactctatttactccatttagagtttggatgtaagacatgtgg 231  Q
    ||||||||||||| ||||  || |||||||||||||||  |||||||| |||||||||||    
T  22748879 atgctccatttagactaagatccatttactccatttaggatttggatgaaagacatgtgg 22748820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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