View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_low_1 (Length: 501)
Name: NF4676_low_1
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_1 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 52 - 485
Target Start/End: Complemental strand, 49521964 - 49521543
Alignment:
| Q |
52 |
tacattggctacataagttaaactaa-cgttcttatggtttgtgaatcaacttctaggtcaatcaacattgacaannnnnnn-gtagtttagaatcataa |
149 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49521964 |
tacattggctacataagttaaactaagcgttcttatggtttgtgaatcaacttctaggtcaatcaacattgacaattttttttgtagtttagaatcataa |
49521865 |
T |
|
| Q |
150 |
caatttaattttattagtaaaaaataaataattttgtaagtataagcaatggcagattattatttaaattttaaagcatgcttaccaaataaatataaaa |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
49521864 |
caatttaattttattagtaaaaaataaataattttgtaagtataagcaacggcagattattatttaaattttaaagcat--------------tataaaa |
49521779 |
T |
|
| Q |
250 |
actttaacgaagatcgggcatatatgtaataactttccaaagatacaatgtgctagtctattggatatattacttttaataacatgacatgagggatccc |
349 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49521778 |
tctttaacgaagatcgagcatatatgtaataactttccaaagatacaatgtgctagtctattggatatattacttttaataacatgacatgagggatccc |
49521679 |
T |
|
| Q |
350 |
tttcatttttgttctaaaaataataacaatatatgttatgatagcagnnnnnnnnnnnnnnnngtaacgttgcaccatgttttgactgcagagagtgaaa |
449 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49521678 |
tttcatttttgttctaaaaatagtaacaatatatgttatgatagcagaaaaaacaaaaacaaagtaacgttgcaccatgttttgactgcagagagtgaaa |
49521579 |
T |
|
| Q |
450 |
aactaggttcaaagagaaatattgagggggttcaac |
485 |
Q |
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| T |
49521578 |
aaccaggttcaaagagaaatattgagggggttcaac |
49521543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 136 - 395
Target Start/End: Original strand, 38870076 - 38870350
Alignment:
| Q |
136 |
gtttagaatcataacaatttaattttattagtaaaaaataaataattttgtaagtataagcaatggcagattattatttaaattttaaagcatgcttacc |
235 |
Q |
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||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| | |
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| T |
38870076 |
gtttataatcatatcaatttaattttattagtaaaaaatttataatttt--aagtataagcaatgtcatattattatttaaattttaaagcaagcttatc |
38870173 |
T |
|
| Q |
236 |
aaataaatataaaaactttaacgaagatcgggcatatatgtaataactttccaaagataca--------atgtgctagtctattggatatattactttta |
327 |
Q |
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|||| ||||||||| ||||||| || ||| | ||||||||||||||||| | |||||||| |||||| || ||||||||||||||||||||| |
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| T |
38870174 |
aaattaatataaaatctttaaccaaaatcatgtatatatgtaataacttttcgaagatacaatcaaatgatgtgccagcctattggatatattactttta |
38870273 |
T |
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| Q |
328 |
a------------taacatgacatgagggatccctttcatttttgttctaaaaataataacaat-atatgttatgatagca |
395 |
Q |
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| T |
38870274 |
acaagcaacaaattaacatgacat--gggatccc--tcatttttgttctaataataataacaataatatgtcatgatagca |
38870350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 3566372 - 3566686
Alignment:
| Q |
20 |
gtgtacatacaaattatccaccaacaaaattct-acattggctacataagttaaactaacgttcttatggtttgtgaatcaacttctaggtcaatcaaca |
118 |
Q |
| |
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|||||||| ||||||||||||| |||| |||| |||||||| |||||||||||||| | |||||||||||||||||||||||| |||| ||||| ||| |
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| T |
3566372 |
gtgtacatgcaaattatccaccgacaaggttcttacattggcaacataagttaaacttaggttcttatggtttgtgaatcaactcctagaccaatcgaca |
3566471 |
T |
|
| Q |
119 |
ttgacaannnnnnn-gtagtttagaatcataa-------caatttaattttattagtaaaaaataaataattttgtaagtataagcaatggcagattatt |
210 |
Q |
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| T |
3566472 |
tcgacaatttttttagtcgtttagaatcatataaattttcaatttaatttgattagtaaaaaataaataatt--gtatgtataagcaatgacatattatt |
3566569 |
T |
|
| Q |
211 |
atttaaattttaaagcatgcttaccaaataaatataaaaactttaacgaagatcgggcatatatgtaataactttccaaagataca--------atgtgc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||||| ||||| |
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| T |
3566570 |
atttaaattttaaagcatgcttaccaaataaatataaaa---------aagatcatgcatatttgtaacaactttccaaagatacaatcaaatgatgtgt |
3566660 |
T |
|
| Q |
303 |
tagtctattggatatattacttttaa |
328 |
Q |
| |
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||||||| |||||||||||||||||| |
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| T |
3566661 |
tagtctactggatatattacttttaa |
3566686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 319 - 396
Target Start/End: Original strand, 3567185 - 3567261
Alignment:
| Q |
319 |
ttacttttaataacatgacatgagggatccctttcatttttgttctaaaaataataacaat-atatgttatgatagcag |
396 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| |
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| T |
3567185 |
ttacttttaataa--tgacatgggggatccctttcatttttgttctaataatagtaacaataatatgttataatagcag |
3567261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 140 - 392
Target Start/End: Original strand, 290160 - 290426
Alignment:
| Q |
140 |
agaatcataacaatttaattttattagtaaaaaataaataattttgtaagtataagcaatggcagattattatt---taaattttaaagcatgcttacca |
236 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||| || ||||||||| ||||||||||| ||||||| ||| |
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| T |
290160 |
agaatcatatcaatttaattttattagtaaaaa-taaacaattttt--agtataagcaatgacaaattattattatttaaattttaaaccatgcttgcca |
290256 |
T |
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| Q |
237 |
aataaatataaaaactttaacgaagatcgggcatatatgtaataactttccaaagatacaatg---tgctagtctattggatatattacttttaa----- |
328 |
Q |
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|||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||| | ||||| |
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| T |
290257 |
gataaatataaaatctttaacaaaaatcatgcatatatgtaataactttccaaagatacaatcaaatgatagtcaattggatatattgcatttaacaagc |
290356 |
T |
|
| Q |
329 |
-------taacatgacatgagggatccctttcatttttgttctaaaaataataacaat-atatgttatgata |
392 |
Q |
| |
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|||| ||||||| ||||||||||||||| |||||||| ||||| |||||| ||||||||||||| |
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| T |
290357 |
aacaaattaacctgacatg--ggatccctttcatttctgttctaataataacaacaataatatgttatgata |
290426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 485
Target Start/End: Original strand, 291287 - 291359
Alignment:
| Q |
413 |
gtaacgttgcaccatgttttgactgcagagagtgaaaaactaggttcaaagagaaatattgagggggttcaac |
485 |
Q |
| |
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||||| |||||||| |||||||| | ||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
291287 |
gtaacattgcaccacgttttgacggttcagagtgacaaaacaggttcaaagagaaatattgagggggttcaac |
291359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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