View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_low_10 (Length: 331)
Name: NF4676_low_10
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 329
Target Start/End: Original strand, 27499368 - 27499694
Alignment:
| Q |
3 |
tttgtgcctcttcatccaccctactaaaagcattagaacttagaatnnnnnnnnnnnnnnnnnnnntaataggcattcccattttcttcattgagattgg |
102 |
Q |
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| T |
27499368 |
tttgtgcctcttcatccaccctactaacagcattagaacttagaatcaaaagaaggaataaaaaaataataggcattcccattttcttcattgagattgg |
27499467 |
T |
|
| Q |
103 |
ttacttagccacaatataatgtccatgctatattagggcatgttattatatatctgaacattttaagttatctttccatagaaattgatcaaactcagaa |
202 |
Q |
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| T |
27499468 |
ttacttagccacaatataatgtccatgctctattagggcatgttattaaatatctgaacattttaagttatctttccatagaaatcgatcaaacttagaa |
27499567 |
T |
|
| Q |
203 |
ggttagcgggcaagtataaagtacattctatatctaactttaaagtgaagaaaatattttctatgttccatttttaagcaatggtttatacaagtgaagg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27499568 |
ggttagcgggcaagtataaagtacattctatatctaactttaaagtgaagaaaatattttctatgttccatttttaagcaatggtttatacaagtgaagg |
27499667 |
T |
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| Q |
303 |
agtaaagttacaaaaacatcacctttg |
329 |
Q |
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| T |
27499668 |
agtaaagttacaaaaacatcacctttg |
27499694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 83 - 329
Target Start/End: Original strand, 27514238 - 27514486
Alignment:
| Q |
83 |
attttcttcattgagattggttacttagccacaatat--aatgtccatgctatattagggcatgttattatatatctgaacattttaagttatctttcca |
180 |
Q |
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| T |
27514238 |
attttcttcattgaaattggttacttagccacaatatataatgtccatgctctattagggcatgttattatatatctgaacattttaagttatctttcca |
27514337 |
T |
|
| Q |
181 |
tagaaattgatcaaactcagaaggttagcgggcaagtataaagtacattctatatctaactttaaagtgaagaaaatattttctatgttccatttttaag |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514338 |
tagaaattgatcaaactcagaaggttagcgggcaagtataaagtacattctatatctaactttaaagtgaagaaaatattttctatgttccatttttaag |
27514437 |
T |
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| Q |
281 |
caatggtttatacaagtgaaggagtaaagttacaaaaacatcacctttg |
329 |
Q |
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| T |
27514438 |
caatggtttatacaagtgaaggagtaaagttacaaaaacatcacctttg |
27514486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 27520602 - 27520694
Alignment:
| Q |
83 |
attttcttcattgagattggttacttagccacaatataatgtccatgctatattagggcatgttattatatatctgaacattttaagttatct |
175 |
Q |
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| T |
27520602 |
attttcttcattgaaattggttacttagccacaatataatgttcatgctctattagggcatgttattatatatctgaacatcttaagttatct |
27520694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 27520713 - 27520812
Alignment:
| Q |
231 |
tatatctaactttaaagtgaagaaaatattttctatgttccattttta-agcaatggtttatacaagtgaaggagtaaagttacaaaaacatcacctttg |
329 |
Q |
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||||||||||||||||||||||||| | || ||| |||| ||||||| |||||| |||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
27520713 |
tatatctaactttaaagtgaagaaatttttatctctgtttcattttttgagcaattgtttatacaagtgaaggagtaaagttgcaaaaacttcacctttg |
27520812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27520517 - 27520564
Alignment:
| Q |
1 |
catttgtgcctcttcatccaccctactaaaagcattagaacttagaat |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27520517 |
catttgtgcctcttcatccaccctactaaaagcattagaacttagaat |
27520564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 27514161 - 27514200
Alignment:
| Q |
9 |
cctcttcatccaccctactaaaagcattagaacttagaat |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
27514161 |
cctcttcatccaccctactaaaagcattagaacttagaat |
27514200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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