View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_low_13 (Length: 306)
Name: NF4676_low_13
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 290
Target Start/End: Complemental strand, 9336113 - 9335853
Alignment:
| Q |
24 |
accaaaatggtagaatgagtcaccaacatagatatttgaat---gtcttaaccattaatcgagggtagtgtgtatggaaaagtatttgttggaaaagtca |
120 |
Q |
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| T |
9336113 |
accaaaatgttagaatgagtcacca---tagatatttgagtactgttttaactattgatcgagggtagtgtgtatggaaaaatatttgttggagatgtca |
9336017 |
T |
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| Q |
121 |
caaatggttgtatatgtatcactactctataaaaaactataaaatgagaatcataccttctacccgttaagaaccaccactaaaagtcctctaatacaag |
220 |
Q |
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| T |
9336016 |
caaatggttgtacatgtatcactactctat--aaaactatataatgagaatcataccttctacctgttaagaaccaccact-------ctcttatacaag |
9335926 |
T |
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| Q |
221 |
ttcccttttagataaatgaaa---attttcagcnnnnnnncatgagcagagggaaatccttcaccggttatga |
290 |
Q |
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| T |
9335925 |
ttcccttttagataagtgagaattattttcagcaaaaaaacatgagcagagggaaatccttcacctgttatga |
9335853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 9363055 - 9362909
Alignment:
| Q |
10 |
attatacttgcaagaccaaaatggtagaatgagtcaccaacatagatatttgaatgtcttaaccattaatcgagggtagtgtgtatggaaaagtatttgt |
109 |
Q |
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| T |
9363055 |
attaaacttacaagacccaaatggtagaatgagtcaccaacatagatatttgagtgtcttaattattaatcgagggtagtgtgtatggaaaaatatttgt |
9362956 |
T |
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| Q |
110 |
tggaaaagtcacaaatggttgtatatgtatcactactctataaaaaa |
156 |
Q |
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| T |
9362955 |
tggagaagtcacaaatggttgtacatatatcactactctataaaaaa |
9362909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 9359733 - 9359591
Alignment:
| Q |
151 |
aaaaaactataaaatgagaatcataccttctacccgttaagaaccaccactaaaagtcctctaatacaagttcccttttagataaatgaaa---attttc |
247 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
9359733 |
aaaaaactataaaatgagcatcataccttctacctgttaagaaccaccactaaaagtcctcttatacaagttcccttttagataagtgaaaattattttc |
9359634 |
T |
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| Q |
248 |
agcnnnnnnncatgagcagagggaaatccttcaccggttatga |
290 |
Q |
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| T |
9359633 |
agcaaaaaaacatgagcagagggaaatccttcacctgttatga |
9359591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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