View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_low_15 (Length: 293)
Name: NF4676_low_15
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 40723950 - 40724196
Alignment:
| Q |
32 |
tcaatgctgttgggacgattagtagcacccatgacaataacatgagcacgagattttagcccatccataagagtcagaagttgtgacacaatccttcttt |
131 |
Q |
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| T |
40723950 |
tcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaacaatccttcttt |
40724049 |
T |
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| Q |
132 |
caacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttcaaatgcttt |
231 |
Q |
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| T |
40724050 |
ctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttcaaacgcttt |
40724149 |
T |
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| Q |
232 |
cctaagattgctttcactctctccagccattttggacataatctctg |
278 |
Q |
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| T |
40724150 |
cctaagattgctttcactctctccagccagtttggacataatctctg |
40724196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 40666120 - 40665870
Alignment:
| Q |
20 |
taccaaaccttctcaatgctgttgggacgattagtagcacccatgacaataacatgagcacgagattttagcccatccataagagtcagaagttgtgaca |
119 |
Q |
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| T |
40666120 |
taccaaaccttctcaatgctgttgggacgattagtagca---at-agaatcaaataa-----agattctagcccatccataagagtcagaagttgtgaga |
40666030 |
T |
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| Q |
120 |
caatccttctttcaacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttcatc-aataaagatgatggatggtgcattcttttctgctt |
218 |
Q |
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| T |
40666029 |
caatccttctttcaacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttcatcaaataaagatgatggatggtgcattcttttctgctt |
40665930 |
T |
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| Q |
219 |
cttcaaatgctttcctaagattgctttcactctctccagccattttggacataatctctg |
278 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40665929 |
cttcaaacgctttcctaagattgctttcactctctccagccagtttggacataatctctg |
40665870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 32 - 276
Target Start/End: Original strand, 41092777 - 41093021
Alignment:
| Q |
32 |
tcaatgctgttgggacgattagtagcacccatgacaataacatgagcacgagattttagcccatccataagagtcagaagttgtgacacaatccttcttt |
131 |
Q |
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|||||||| ||||| | ||| || || ||||| ||||| ||||| ||||| ||||| || ||||||||||| |||| ||||| || |||||||| || | |
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| T |
41092777 |
tcaatgctattgggcctatttgtggctcccataacaattacatgtgcacgtgatttaagaccatccataagggtcaagagttgggagacaatcctcctct |
41092876 |
T |
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| Q |
132 |
caacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttcaaatgcttt |
231 |
Q |
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| |||||||||| || ||||| ||||| || || || ||||| || |||||||||||||||||||| ||||||||||| || ||||| |||||||| || |
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| T |
41092877 |
ctacttcaccgtgagttttctctcgcttaggagctatggaatctatctcatcaataaagatgatggaaggtgcattcttctcagcttcctcaaatgcctt |
41092976 |
T |
|
| Q |
232 |
cctaagattgctttcactctctccagccattttggacataatctc |
276 |
Q |
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||| ||||||||||||||||| ||||| | ||| ||||| ||||| |
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| T |
41092977 |
ccttagattgctttcactctcaccagcaagtttcgacattatctc |
41093021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 35 - 260
Target Start/End: Complemental strand, 27977524 - 27977299
Alignment:
| Q |
35 |
atgctgttgggacgattagtagcacccatgacaataacatgagcacgagattttagcccatccataagagtcagaagttgtgacacaatccttctttcaa |
134 |
Q |
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||||| ||||||||||| || || ||||| ||||| ||||| ||||| ||||| ||||||||||| || |||| || || || ||||| |||| |||| |
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| T |
27977524 |
atgctattgggacgatttgttgctcccataacaattacatgtgcacgggatttaagcccatccatgagggtcaagagctgggaaacaattcttcgctcaa |
27977425 |
T |
|
| Q |
135 |
cttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttcaaatgctttcct |
234 |
Q |
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||||||| || |||||||||| ||| || ||||| || || || |||||||| |||||||| || ||||||||||| || |||||||| ||||| ||||| |
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| T |
27977424 |
cttcaccattagtcttctccctctttggagcaatggagtctatctcatcaatgaagatgattgagggtgcattcttctcagcttcttcgaatgccttcct |
27977325 |
T |
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| Q |
235 |
aagattgctttcactctctccagcca |
260 |
Q |
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||||| ||||||||||| ||||||| |
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| T |
27977324 |
cagattactttcactctcaccagcca |
27977299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 15690421 - 15690253
Alignment:
| Q |
33 |
caatgctgttgggacgattagtagcacccatgacaataacatgagcacgagattttagcccatccataagagtcagaagttgtgacacaatccttctttc |
132 |
Q |
| |
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||||||| || ||| ||||||||||||| || | |||| || ||||| ||||| | | |||||||||| ||| | |||||| ||||||||||| || |
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| T |
15690421 |
caatgctattaggatgattagtagcaccaataagcataatataagcacatgatttcaatcaatccataagattcaagacttgtgaaacaatccttctatc |
15690322 |
T |
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| Q |
133 |
aacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtg |
203 |
Q |
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||||||| | ||||||||| | |||||| || ||||||||| |||||||||||||| |||| |||||| |
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| T |
15690321 |
aacttcatcacgtgtcttctctc--ttgggtacagtagaatcaaattcatcaataaagaagatgaatggtg |
15690253 |
T |
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