View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4676_low_16 (Length: 283)

Name: NF4676_low_16
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4676_low_16
NF4676_low_16
[»] chr7 (20 HSPs)
chr7 (1-169)||(23860501-23860669)
chr7 (171-258)||(23859954-23860041)
chr7 (177-266)||(11061091-11061180)
chr7 (177-266)||(24339597-24339686)
chr7 (177-266)||(25481857-25481946)
chr7 (1-102)||(23864114-23864215)
chr7 (177-266)||(13770646-13770735)
chr7 (202-267)||(15680789-15680854)
chr7 (177-267)||(1433409-1433499)
chr7 (177-266)||(5409851-5409940)
chr7 (171-262)||(29763193-29763284)
chr7 (181-267)||(7328705-7328791)
chr7 (177-267)||(17851386-17851476)
chr7 (203-265)||(32308101-32308163)
chr7 (181-266)||(27945000-27945085)
chr7 (202-254)||(18215213-18215265)
chr7 (181-253)||(21826232-21826304)
chr7 (198-266)||(24105654-24105722)
chr7 (207-267)||(29787383-29787443)
chr7 (209-265)||(35861951-35862007)
[»] chr6 (28 HSPs)
chr6 (177-267)||(7938071-7938161)
chr6 (177-266)||(16766652-16766741)
chr6 (177-266)||(9107385-9107474)
chr6 (187-267)||(3398584-3398663)
chr6 (177-266)||(8776988-8777077)
chr6 (177-266)||(7977845-7977934)
chr6 (202-266)||(17841604-17841668)
chr6 (177-267)||(5732524-5732614)
chr6 (177-266)||(426529-426618)
chr6 (177-266)||(1681713-1681802)
chr6 (181-266)||(12696284-12696368)
chr6 (198-266)||(10770689-10770757)
chr6 (186-266)||(34595098-34595178)
chr6 (198-267)||(9658855-9658924)
chr6 (177-231)||(18367792-18367845)
chr6 (178-267)||(9027134-9027223)
chr6 (182-267)||(13851696-13851781)
chr6 (171-255)||(24115873-24115957)
chr6 (202-266)||(28152079-28152142)
chr6 (202-264)||(10842512-10842574)
chr6 (181-266)||(853874-853959)
chr6 (209-266)||(6214547-6214604)
chr6 (209-266)||(7801171-7801228)
chr6 (181-266)||(8365534-8365619)
chr6 (170-231)||(11352307-11352368)
chr6 (185-266)||(3209345-3209426)
chr6 (198-266)||(16833284-16833352)
chr6 (215-267)||(26562682-26562734)
[»] chr3 (21 HSPs)
chr3 (177-266)||(10268501-10268590)
chr3 (177-266)||(35994753-35994841)
chr3 (177-263)||(16000034-16000120)
chr3 (177-263)||(10335304-10335390)
chr3 (177-266)||(15796309-15796398)
chr3 (186-266)||(28917965-28918045)
chr3 (187-266)||(8587036-8587115)
chr3 (187-266)||(55401040-55401119)
chr3 (177-263)||(3164043-3164129)
chr3 (209-266)||(4987306-4987363)
chr3 (208-266)||(14747547-14747606)
chr3 (179-266)||(4990982-4991069)
chr3 (215-266)||(14209106-14209157)
chr3 (198-265)||(14979157-14979224)
chr3 (181-267)||(8383216-8383302)
chr3 (208-266)||(21479104-21479162)
chr3 (178-268)||(23915915-23916005)
chr3 (177-267)||(38731173-38731263)
chr3 (198-267)||(25064885-25064954)
chr3 (222-266)||(1509539-1509583)
chr3 (198-266)||(26492220-26492288)
[»] scaffold0053 (1 HSPs)
scaffold0053 (177-266)||(8753-8842)
[»] scaffold0027 (1 HSPs)
scaffold0027 (177-266)||(46637-46726)
[»] chr5 (21 HSPs)
chr5 (177-266)||(21522705-21522794)
chr5 (177-266)||(21533271-21533360)
chr5 (177-263)||(13287417-13287503)
chr5 (179-266)||(21191071-21191158)
chr5 (181-267)||(22013373-22013459)
chr5 (202-266)||(14674249-14674313)
chr5 (178-267)||(16203809-16203898)
chr5 (185-262)||(19552562-19552639)
chr5 (177-231)||(15382432-15382486)
chr5 (181-266)||(37328859-37328944)
chr5 (177-267)||(6770498-6770588)
chr5 (215-266)||(33178018-33178069)
chr5 (207-266)||(39698526-39698585)
chr5 (188-266)||(6247588-6247666)
chr5 (233-267)||(25978984-25979018)
chr5 (208-266)||(31084309-31084367)
chr5 (177-266)||(6326312-6326401)
chr5 (198-267)||(14422880-14422947)
chr5 (177-266)||(19579656-19579745)
chr5 (177-266)||(41995426-41995515)
chr5 (215-267)||(42029745-42029797)
[»] chr1 (28 HSPs)
chr1 (177-267)||(398779-398869)
chr1 (178-266)||(13011230-13011319)
chr1 (177-267)||(1486723-1486813)
chr1 (183-265)||(15323124-15323206)
chr1 (198-266)||(14359537-14359604)
chr1 (202-266)||(46348398-46348462)
chr1 (198-266)||(48450602-48450670)
chr1 (177-231)||(10577785-10577839)
chr1 (208-266)||(22881631-22881689)
chr1 (198-266)||(5376515-5376583)
chr1 (177-266)||(42359464-42359553)
chr1 (184-267)||(5944243-5944328)
chr1 (178-266)||(6612186-6612274)
chr1 (202-266)||(18556471-18556535)
chr1 (215-266)||(113292-113343)
chr1 (179-262)||(21366039-21366122)
chr1 (215-266)||(22515902-22515953)
chr1 (177-267)||(38503275-38503365)
chr1 (185-266)||(40917714-40917793)
chr1 (177-262)||(2896140-2896225)
chr1 (207-264)||(9103625-9103682)
chr1 (181-266)||(10572604-10572689)
chr1 (177-266)||(16297298-16297387)
chr1 (202-267)||(36878441-36878506)
chr1 (177-266)||(38078676-38078760)
chr1 (177-263)||(48040479-48040566)
chr1 (198-266)||(21378554-21378622)
chr1 (217-265)||(39953162-39953210)
[»] scaffold0003 (1 HSPs)
scaffold0003 (186-267)||(241558-241639)
[»] chr8 (18 HSPs)
chr8 (171-255)||(22651925-22652009)
chr8 (184-266)||(22197757-22197839)
chr8 (177-260)||(27101470-27101553)
chr8 (181-255)||(13436990-13437064)
chr8 (180-266)||(31556955-31557040)
chr8 (177-266)||(2572071-2572160)
chr8 (177-266)||(29510319-29510408)
chr8 (178-266)||(4673440-4673528)
chr8 (207-267)||(15816143-15816203)
chr8 (198-266)||(20873045-20873113)
chr8 (198-266)||(4298901-4298969)
chr8 (187-267)||(25192361-25192441)
chr8 (191-266)||(8343285-8343360)
chr8 (197-267)||(36934645-36934715)
chr8 (209-266)||(22595981-22596038)
chr8 (210-266)||(24613509-24613564)
chr8 (202-266)||(36450769-36450833)
chr8 (215-267)||(39954293-39954345)
[»] chr4 (7 HSPs)
chr4 (178-266)||(23293001-23293089)
chr4 (177-267)||(35157999-35158089)
chr4 (177-266)||(27706192-27706281)
chr4 (171-266)||(2361990-2362087)
chr4 (178-267)||(12895288-12895377)
chr4 (186-266)||(21945467-21945547)
chr4 (198-266)||(40481613-40481680)
[»] scaffold0652 (1 HSPs)
scaffold0652 (177-266)||(477-566)
[»] chr2 (20 HSPs)
chr2 (181-266)||(6940214-6940299)
chr2 (177-266)||(30335372-30335461)
chr2 (181-266)||(20539689-20539774)
chr2 (177-266)||(21374714-21374798)
chr2 (184-266)||(15657826-15657908)
chr2 (198-267)||(20242741-20242810)
chr2 (182-266)||(21624226-21624311)
chr2 (178-267)||(34784996-34785085)
chr2 (198-266)||(18841028-18841096)
chr2 (207-266)||(24894374-24894433)
chr2 (200-267)||(31018568-31018635)
chr2 (177-266)||(18421919-18422007)
chr2 (187-266)||(19536412-19536492)
chr2 (177-267)||(21616717-21616807)
chr2 (198-267)||(36409641-36409710)
chr2 (178-267)||(36756358-36756447)
chr2 (183-267)||(28412311-28412395)
chr2 (202-266)||(30404865-30404929)
chr2 (177-257)||(34337200-34337280)
chr2 (202-266)||(37558957-37559021)
[»] scaffold0223 (1 HSPs)
scaffold0223 (187-266)||(20137-20216)
[»] scaffold0116 (1 HSPs)
scaffold0116 (177-231)||(9853-9907)
[»] scaffold0021 (1 HSPs)
scaffold0021 (177-266)||(130437-130526)
[»] scaffold0103 (1 HSPs)
scaffold0103 (202-266)||(51791-51855)
[»] scaffold0011 (1 HSPs)
scaffold0011 (207-266)||(17764-17823)
[»] scaffold0171 (1 HSPs)
scaffold0171 (181-267)||(23380-23465)
[»] scaffold0018 (1 HSPs)
scaffold0018 (198-266)||(178833-178902)
[»] scaffold0246 (1 HSPs)
scaffold0246 (198-266)||(19552-19619)
[»] scaffold0227 (1 HSPs)
scaffold0227 (215-267)||(7325-7377)
[»] scaffold0007 (1 HSPs)
scaffold0007 (184-228)||(225321-225365)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 23860669 - 23860501
Alignment:
Q  1 tcaggatttcaagtttgtgaaagcacttattttctgtcattgtgtttttactgttgggatttcatttcataataagttttggtatgtagttttttccatg 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23860669 tcagaatttcaagtttgtgaaagcacttattttctgtcattgtgtttttactgttgggatttcatttcataataagttttggtatgtagttttttccatg 23860570  T
Q  101 aggaagaaatcaataatattgttgtcatttttcatatttcaatcaataaagaaaaggatttttgtcccg 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23860569 aggaagaaatcaataatattgttgtcatttttcatatttcaatcaataaagaaaaggatttttgtcccg 23860501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 23860041 - 23859954
Alignment:
Q  171 aagtaaggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttag 258  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||  ||||||||||| |||||| ||||||||||    
T  23860041 aagtaaggatacggacacggacatcgaacacgacatggatactgacacaccgacacatatacaaaatttagaaaatcgcataatttag 23859954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 11061180 - 11061091
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||||||||||||| | |||||| ||||||| |||| ||||||||||||  || || |||||||||||||||||||| ||||||    
T  11061180 ggatacggacacggacatcggatacgacacggacactgacacaccgacacagctaataatttgaaaaaatcacataatttagtataatta 11061091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 24339597 - 24339686
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||| ||||||| || |||||||||||||| | |||||||||||||||||  || || |||||||||||||||| ||||||||||    
T  24339597 ggatacggatacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 24339686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 25481857 - 25481946
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| ||||||||||||| |||| ||||||||| | |||||||||||||||||  || || |||||||||||||||| ||||||||||    
T  25481857 ggatacagacacggacatcggacacaacatggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 25481946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 23864215 - 23864114
Alignment:
Q  1 tcaggatttcaagtttgtgaaagcacttattttctgtcattgtgtttttactgttgggatttcatttcataataagttttggtatgtagtt-ttttccat 99  Q
    |||| |||||||||||||||||| ||||||| ||||||||| |  ||||  |||| |||||||||||||||||| |||||||||||| ||| ||||||||    
T  23864215 tcagaatttcaagtttgtgaaagaacttattatctgtcatt-tagttttgttgtttggatttcatttcataatatgttttggtatgtggttcttttccat 23864117  T
Q  100 gag 102  Q
    |||    
T  23864116 gag 23864114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 13770646 - 13770735
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| |||| ||||||||| |||||||| ||||||| | |||||||||||||||  || || ||||||| |||||||| ||||||||||    
T  13770646 ggatatggactcggacatcggacacgacacggacactgatacgccgacacagctaataatttaaaaaaattacataattcagtgtaatta 13770735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 15680789 - 15680854
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||| ||||||||||| |||||  || |  ||||||||||||||||||||||||||||    
T  15680789 gacatggacactgacacgccgacatagctaataattaaaaaaaatcacataatttagtgtaattat 15680854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 1433409 - 1433499
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||| |||||||| ||||||||||| ||||| | |||||||||||| | ||  || || | |||||||||| |||| ||||||||||    
T  1433409 ggatacgggcacggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaaaatcacatcatttggtgtaattat 1433499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 5409940 - 5409851
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| ||||| |||| || | |||||||||||||| |||||| || |||||||  || || |||||||||||||||| |||| |||||    
T  5409940 ggatacagacacagacaccggatacgacatggacactgacacgctgatacagctaataatttgaaaaaatcacataattcagtgcaatta 5409851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 29763284 - 29763193
Alignment:
Q  171 aagtaaggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgta 262  Q
    ||||| ||||||| |||| |||| |||||||||||| |||||| |||| || ||||| ||   || || |||||||||||||||| ||||||    
T  29763284 aagtacggatacgaacacagacaccgaacacgacatagacactgacacaccaacacaacttataatttgaaaaaatcacataattaagtgta 29763193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 7328791 - 7328705
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||| ||||||| |||||||||||  |||| ||||||| ||| || ||||  || || | ||||| ||||||||||||||||||||    
T  7328791 acggatacggacaccgaacacgacacagacattaacacgtcgatactgctaataatttgagaaaataacataatttagtgtaattat 7328705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 17851386 - 17851476
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||| |||||||||| || |||||||||||| ||  ||||  ||| || ||||  || |||| |||||||||||||| |||||||||||    
T  17851386 ggatacagacacggacaccggacacgacatggataccgacacatcgataccgctaataattttagaaaatcacataattcagtgtaattat 17851476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 32308101 - 32308163
Alignment:
Q  203 acatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatt 265  Q
    ||||||||||| |||||||||||| ||||  || || | |||||||||||||| |||||||||    
T  32308101 acatggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaatt 32308163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 27945000 - 27945085
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| ||||||| || |||||||| ||||||| ||||||||||||  |||  || || | ||||| |||||||| ||||||||||    
T  27945000 acggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaatta 27945085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 18215265 - 18215213
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataat 254  Q
    |||| |||||||||||||||||| ||||||  || || |||||||||||||||    
T  18215265 gacacggacactaacacgccgacgcagctaataatttgaaaaaatcacataat 18215213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 21826232 - 21826304
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataa 253  Q
    ||||||| ||||| |  ||||||||| |||||||||||||||||||  |||  || || ||||||||||||||    
T  21826232 acggacatggacaccagacacgacatagacactaacacgccgacacgactaataatttaaaaaaatcacataa 21826304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 24105654 - 24105722
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||| ||||||| |||||||||||||||||  || || |||||||  ||| ||| ||||||||||    
T  24105654 acacgacacggacactgacacgccgacacagctaataatttgaaaaaattgcatgattcagtgtaatta 24105722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 29787443 - 29787383
Alignment:
Q  207 ggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||| |||||||||||||| ||||  || || | |||||||||||||| |||||||||||    
T  29787443 ggacattaacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 29787383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 35861951 - 35862007
Alignment:
Q  209 acactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatt 265  Q
    ||||||||||||||||||| |||  || || |||||||||||||||| | |||||||    
T  35861951 acactaacacgccgacacaactaataatttgaaaaaatcacataattcaatgtaatt 35862007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 7938071 - 7938161
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||||||||||||||| || |||||||||||||||| |||||||||||||||||  || || ||||||||| ||||||||||||||||||    
T  7938071 ggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattat 7938161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 16766652 - 16766741
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||||||| || |||||||||||||||| |||||||||||||||||  || || |||||||||||||||| ||||||||||    
T  16766652 ggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 16766741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 9107474 - 9107385
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| |||||||||| || |||||||| |||||||||||||||||||||||||  || || ||||||||||| |||| ||||||||||    
T  9107474 ggatactgacacggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaatta 9107385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 3398584 - 3398663
Alignment:
Q  187 acggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| | ||||| |||||||| |||||| |||||||||||    
T  3398584 acggacatcgaacacgacacggacactgacacgccgacacagcta-ataatttgaaaaatcatataattcagtgtaattat 3398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 8777077 - 8776988
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||||||| || |||||||| ||||||| ||||||||||||| |||  || || ||||||||||| |||| ||||||||||    
T  8777077 ggatacggacacggacaacggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaatta 8776988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 7977934 - 7977845
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| |||||||||||  | |||||||||||| ||| |||||||||||||||||  || || ||||||| |||||||| ||||||||||    
T  7977934 ggatatggacacggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaatta 7977845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 17841668 - 17841604
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||| ||||||| |||||||||||||||||  || || |||||||||||||||||||||||||||    
T  17841668 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaatta 17841604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 5732614 - 5732524
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||| ||||||||||  | |||||||||||||||| |||||||||||| | ||  || || | ||||||||||| ||||||||||||||    
T  5732614 ggatacagacacggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaattat 5732524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 426618 - 426529
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| |||||||| | || |||||||| ||||||| |||||||||||||| ||  || || |||||||||||||||| | ||||||||    
T  426618 ggatacagacacggataccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaatta 426529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 1681713 - 1681802
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| ||||| |||| |||||||||||   ||||||||||||||||||| |||  || || |||||||||| ||||| ||||||||||    
T  1681713 ggatacagacacagacaccgaacacgacacatacactaacacgccgacacaactaataatttgaaaaaatcacgtaattcagtgtaatta 1681802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 12696284 - 12696368
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| ||||||| || |||||||| ||||||| |||||||||||||||||  || || ||||||| |||||||| ||||||||||    
T  12696284 acggatacggaca-cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaatta 12696368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 10770757 - 10770689
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||||||||| ||||||| ||||| |||  || || |||||||||||||||| ||||||||||    
T  10770757 acacgacatggacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaatta 10770689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 34595098 - 34595178
Alignment:
Q  186 cacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||| || |||||||| ||||| | ||||||||||||| |||  || || |||||||||||||||| ||||||||||    
T  34595098 cacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatta 34595178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 9658855 - 9658924
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaa-aaaatcacataatttagtgtaattat 267  Q
    |||||||| ||||||| |||||||||||| |||| | ||||||| |||||||||||||| |||||||||||    
T  9658855 acacgacacggacactgacacgccgacaccgcta-ataatttaagaaaatcacataattcagtgtaattat 9658924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 18367792 - 18367845
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagcta 231  Q
    ||||||||||||||||| || |||||||||||||||  |||||||||||||||||    
T  18367792 ggatacggacacggacaccggacacgacatggacac-gacacgccgacacagcta 18367845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 9027134 - 9027223
Alignment:
Q  178 gatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||||||  || |||||||| ||||||| |||||||||||| ||||  || || | | ||||||||||||  ||||||||||    
T  9027134 gatacggacacggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattat 9027223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 13851696 - 13851781
Alignment:
Q  182 cggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||||||||||| |||||||||| ||||||| ||||| |||||| ||||  || || | ||||| || ||||| |||||||||||    
T  13851696 cggacacggacattgaacacgacacggacactgacacgtcgacaccgctaataatttgagaaaataacgtaattcagtgtaattat 13851781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 24115957 - 24115873
Alignment:
Q  171 aagtaaggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatt 255  Q
    ||||| |||||| ||||| |||| |||||||||||| | |||| |||||| |||||| |||  || || ||||||||||||||||    
T  24115957 aagtacggatacagacacagacaccgaacacgacataggcactgacacgctgacacaactaataatttcaaaaaatcacataatt 24115873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 28152079 - 28152142
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||| ||||||| ||||||||||| ||||| | ||||| ||||||||||||||| ||||||||||    
T  28152079 gacacggacactgacacgccgacaaagcta-ataatttgaaaaatcacataattcagtgtaatta 28152142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 10842512 - 10842574
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaat 264  Q
    ||||| |||||  |||||||||||| ||||  || || |||||||||||||||||||||||||    
T  10842512 gacattgacacggacacgccgacaccgctaataatttgaaaaaatcacataatttagtgtaat 10842574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 853959 - 853874
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| ||||||| || |||||||| |||  || ||||||||||||| |||  || || |||||||||||||||| |||| |||||    
T  853959 acggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatcacataattaagtgcaatta 853874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 6214547 - 6214604
Alignment:
Q  209 acactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||||| || ||||  || ||||||||| ||||||||| ||||||||||    
T  6214547 acactaacacgccgataccgctagtaattttaaaaaaacacataattaagtgtaatta 6214604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 7801228 - 7801171
Alignment:
Q  209 acactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||||||||| |||  || || |||||||||||||||| || |||||||    
T  7801228 acactaacacgccgacacaactaataatttgaaaaaatcacataattcagcgtaatta 7801171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 8365619 - 8365534
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| ||||||| |  |||||||| ||||||| ||||||||||||| |||  || || |||| |||||||||||  |||||||||    
T  8365619 acggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaatta 8365534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 11352307 - 11352368
Alignment:
Q  170 aaagtaaggatacggacacggacatcgaacacgacatggacactaacacgccgacacagcta 231  Q
    ||||||| |||| |||||||||||||||||||||||  || ||||||| | |||||| ||||    
T  11352307 aaagtaaagatatggacacggacatcgaacacgacacagatactaacatgtcgacaccgcta 11352368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 3209345 - 3209426
Alignment:
Q  185 acacggacatcgaacacgacatggacactaacacgccgacacagctacaaaattt--aaaaaatcacataatttagtgtaatta 266  Q
    ||||||||| || |||||||| | ||||  ||||||||||||||||| | |||||  |||||||||||||||||||||| ||||    
T  3209345 acacggacaccggacacgacacg-acacagacacgccgacacagcta-ataatttgaaaaaaatcacataatttagtgttatta 3209426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 16833284 - 16833352
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||  |||||| ||||||||||||| |||  || || ||||||||||||| || ||||||||||    
T  16833284 acacgacacagacactgacacgccgacacaactaataatttgaaaaaatcacatacttcagtgtaatta 16833352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 26562682 - 26562734
Alignment:
Q  215 acacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||| |||| ||| || | |||||||||||||| |||||||||||    
T  26562682 acacgccgacactgctaaaaatttgagaaaatcacataattcagtgtaattat 26562734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 10268590 - 10268501
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||| |||||||||||||  |||||||||||||| |||||||||||||| ||  || || |||||||||||||||||||||||||||    
T  10268590 ggatacgaacacggacatcgattacgacatggacactgacacgccgacacagttaataatttgaaaaaatcacataatttagtgtaatta 10268501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 35994841 - 35994753
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||| ||||| || |||||||||||||| | ||| ||||||||||||| | ||||| ||||||||||||||| ||||||||||    
T  35994841 ggatacggacatggacaccggacacgacatggacaatgacaagccgacacagcta-ataatttgaaaaatcacataattcagtgtaatta 35994753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 16000120 - 16000034
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaa 263  Q
    ||||||||||||||||| |||||||||||  |||||| ||||||||||||| |||  || || ||||||| |||||||| |||||||    
T  16000120 ggatacggacacggacaccgaacacgacacagacactgacacgccgacacaactaataatttaaaaaaataacataattcagtgtaa 16000034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 10335390 - 10335304
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaa 263  Q
    ||||||| ||||||||| || |||||||| ||||||| ||||||||||||| |||  || || ||||| ||||||| ||||||||||    
T  10335390 ggatacgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaagtcacatattttagtgtaa 10335304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 15796398 - 15796309
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| ||||||||||| || |||||||| ||||| | |||||||||||||| ||  || || ||||||||| |||||| ||||||||||    
T  15796398 ggatatggacacggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcatataattcagtgtaatta 15796309  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 28917965 - 28918045
Alignment:
Q  186 cacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||| || |||||||| ||| ||| ||||||||||| |||||  || || |||||||||||||||| ||||||||||    
T  28917965 cacggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatcacataattcagtgtaatta 28918045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 8587115 - 8587036
Alignment:
Q  187 acggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||| || ||| |||| ||||||| ||||||||||||| |||  || || |||||||||||||||| ||||||||||    
T  8587115 acggacaccggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatcacataattaagtgtaatta 8587036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 55401040 - 55401119
Alignment:
Q  187 acggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||| || | |||||| ||||||| | ||||||||||| |||  || || |||||||||||||||||||||||||||    
T  55401040 acggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatcacataatttagtgtaatta 55401119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 3164129 - 3164043
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaa 263  Q
    |||||| |||||||||| || |||||||| ||||| |  |||| |||||||||||  || || |||||||||||||||| |||||||    
T  3164129 ggatacagacacggacaccggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatcacataattcagtgtaa 3164043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 4987363 - 4987306
Alignment:
Q  209 acactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| |||||||||||||||||  || || |||||||||||||||| ||||||||||    
T  4987363 acactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 4987306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 14747547 - 14747606
Alignment:
Q  208 gacactaacacgccgacacagctacaaaattt--aaaaaatcacataatttagtgtaatta 266  Q
    |||||| ||||||||||||||||| | |||||  |||||||||||||||||||||||||||    
T  14747547 gacactgacacgccgacacagcta-ataatttgaaaaaaatcacataatttagtgtaatta 14747606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 4991069 - 4990982
Alignment:
Q  179 atacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||||| ||||||||||| ||| ||| |||| ||||||| ||||  |  || | ||||| |||||||| ||||||||||    
T  4991069 atacggacacggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaattacataattcagtgtaatta 4990982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 14209106 - 14209157
Alignment:
Q  215 acacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||| |||  || ||||||||||||||||||| ||||||||||    
T  14209106 acacgccgacacaactaataattttaaaaaatcacataattcagtgtaatta 14209157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 14979157 - 14979224
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatt 265  Q
    |||||||| ||||| |  ||||||||||||||||  || || |||||||||||||||| |||||||||    
T  14979157 acacgacaaggacaatggcacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatt 14979224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 8383216 - 8383302
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||||  | |||||||| ||||| | |||||||||||| ||||  || || | ||||||| |||||| |||||||||||    
T  8383216 acggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattat 8383302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 21479104 - 21479162
Alignment:
Q  208 gacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| |||||||||||||||||  || || ||||||||||| |||| ||||||||||    
T  21479104 gacactgacacgccgacacagctaataatttgaaaaaatcacacaattcagtgtaatta 21479162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 23915915 - 23916005
Alignment:
Q  178 gatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattatt 268  Q
    |||||||||||||||| || ||||||||  || ||| ||| ||| |||||||||  || || ||||||||||| |||| | ||||||||||    
T  23915915 gatacggacacggacaccggacacgacacagaaactgacatgccaacacagctaacaacttgaaaaaatcacacaattaaatgtaattatt 23916005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 38731173 - 38731263
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||| |||||||||||| || |||||||||| ||||  ||| | ||| || ||||  || ||||||||||||||||||| |||||| ||||    
T  38731173 ggatgcggacacggacaacggacacgacatgtacaccgacatgtcgataccgctaataattttaaaaaatcacataattcagtgtagttat 38731263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 25064885 - 25064954
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||||||  |||| | |||||||||||| ||||   | || ||||||||||||||||||||||||||||    
T  25064885 acacgacacagacattgacacgccgacaccgctaatgatttgaaaaaatcacataatttagtgtaattat 25064954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 1509539 - 1509583
Alignment:
Q  222 gacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||  || || |||||||||||||||||||||||||||    
T  1509539 gacacagctaataatttgaaaaaatcacataatttagtgtaatta 1509583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 26492288 - 26492220
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||| ||||||| ||||||||||| |||||  || || ||||||||| | |||| ||||||||||    
T  26492288 acacgacacggacactgacacgccgacagagctaataatttgaaaaaatcatacaattcagtgtaatta 26492220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 8753 - 8842
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||||||| || |||||||| ||||||| |||||||||||||||||  || || ||||||||| || ||||||||||||||    
T  8753 ggatacggacacggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgtaatta 8842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 46637 - 46726
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||||||||||||| |||||||| ||||| | |||||||||||||| ||  || || |||||||||||||||| ||||||||||    
T  46637 ggatacggacacggacatcggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataattcagtgtaatta 46726  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 21522705 - 21522794
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||||||| || || |||||||| ||||||| |||||||||||||||||  || |||||||||| |||||||| ||||||||||    
T  21522705 ggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaatta 21522794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 21533271 - 21533360
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||||||| || || |||||||| ||||||| |||||||||||||||||  || |||||||||| |||||||| ||||||||||    
T  21533271 ggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaatta 21533360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 13287503 - 13287417
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaa 263  Q
    ||||||||||||||||| || |||||||| ||||||||||||| |||||||| ||  || || |||||||||||||||| |||||||    
T  13287503 ggatacggacacggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaa 13287417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 21191158 - 21191071
Alignment:
Q  179 atacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||| |||| || |||||||| ||||||| ||| |||||||||||||  || || |||||||||||||||| ||||||||||    
T  21191158 atacggacactgacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 21191071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 22013373 - 22013459
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||| ||||||| || |||||||| ||||||| |||||||||||||||||  || ||  |||||| ||||||||||||||||||||    
T  22013373 acggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaattacataatttagtgtaattat 22013459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 14674249 - 14674313
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||| ||||||| |||||||||||||||||  || || |||||||||||||||||||||||||||    
T  14674249 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaatta 14674313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 16203898 - 16203809
Alignment:
Q  178 gatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||| ||||| |||| |||||| |||| ||||||||||| |||||||| ||||  || || | |||||| |||||||||||||||||||    
T  16203898 gatacagacacagacaccgaacatgacacggacactaacatgccgacactgctaataatttgagaaaatctcataatttagtgtaattat 16203809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 19552639 - 19552562
Alignment:
Q  185 acacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgta 262  Q
    |||||| || ||||||||||| ||||||| |||||||||||||| ||  || || |||||||||||||||| ||||||    
T  19552639 acacggccaccgaacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaagtgta 19552562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 15382432 - 15382486
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagcta 231  Q
    ||||||||||||||||| || |||||||| ||||| | |||||||||||||||||    
T  15382432 ggatacggacacggacaccggacacgacacggacaatgacacgccgacacagcta 15382486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 37328944 - 37328859
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||| ||||||||||| ||||||| | || |||||||||| |  || ||  |||||||||| |||| ||||||||||    
T  37328944 acggacacggacaccgaacacgacacggacactgatacaccgacacagcaaataatttgtaaaaatcacaaaattcagtgtaatta 37328859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 6770498 - 6770588
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaa-aaaatcacataatttagtgtaattat 267  Q
    ||||||||| ||||||| |||||| |||| ||||||| |||| | |||||| ||| | ||||||| |||||||||||||| |||||| ||||    
T  6770498 ggatacggatacggacaccgaacatgacacggacactgacacactgacacaacta-ataatttaagaaaatcacataattcagtgtacttat 6770588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 33178018 - 33178069
Alignment:
Q  215 acacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||| |||  || || |||||||||||||||||||||||||||    
T  33178018 acacgccgacacaactaataatttaaaaaaatcacataatttagtgtaatta 33178069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 39698526 - 39698585
Alignment:
Q  207 ggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||| |||||| ||||||||||  || || |||||||||||||||| ||||||||||    
T  39698526 ggacactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaatta 39698585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 6247588 - 6247666
Alignment:
Q  188 cggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| || |||||| | | ||||| ||||||||||||| |||  || || |||||||||||||||| ||||||||||    
T  6247588 cggacaccggacacgatacgcacactgacacgccgacacatctaataatttgaaaaaatcacataattcagtgtaatta 6247666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 25979018 - 25978984
Alignment:
Q  233 aaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||||||||||||||||||||| ||||    
T  25979018 aaaatttaaaaaatcacataatttagtgtagttat 25978984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 31084309 - 31084367
Alignment:
Q  208 gacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| |||||||||||||||||  || || |||||||||||||||| | ||||||||    
T  31084309 gacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatgtaatta 31084367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 6326401 - 6326312
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| ||||||||| | || |||||||| ||||||| |||||||||||  ||||  || || | ||||| |||||||| ||||||||||    
T  6326401 ggataaggacacggataccggacacgacacggacactgacacgccgacatcgctagtaatttgagaaaattacataattcagtgtaatta 6326312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 14422880 - 14422947
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||| ||||||| |||| |||| ||||||| | ||||||||| ||||||||||| |||||||||||    
T  14422880 acacgacaaggacactgacacaccgatacagcta-ataatttaaaa-atcacataattcagtgtaattat 14422947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 19579656 - 19579745
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||| |||| |||| || | || ||| ||||||| | |||||||||||||||  || || | ||||||||||||||||||| |||||    
T  19579656 ggatacgtacaccgacaccggatacaacacggacactgatacgccgacacagctaataatttgagaaaatcacataatttagtgcaatta 19579745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 41995426 - 41995515
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||||||||||  | | ||||||  |||||| ||||||||||||| |||  || |  |||||||||||||||| | ||||||||    
T  41995426 ggatacggacacggacactggatacgacacagacactgacacgccgacacaactaataattcgaaaaaatcacataattcaatgtaatta 41995515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 42029745 - 42029797
Alignment:
Q  215 acacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||||  || |||||||| |||||||||||||| | |||||||||    
T  42029745 acacgccgacacaattaaaaaatttagaaaatcacataattcaatgtaattat 42029797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 398869 - 398779
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||| |||||| || |||||||| ||||||| |||||||||||| ||||  || || |||||||||||||||| |||||||||||    
T  398869 ggatacggacgcggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattat 398779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 13011319 - 13011230
Alignment:
Q  178 gatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaattt--aaaaaatcacataatttagtgtaatta 266  Q
    ||||| |||||||||| ||||||||||| | ||||| ||| ||||||||||||| | |||||  |||||||||||||||| ||||||||||    
T  13011319 gatacagacacggacaccgaacacgacacgaacactgacatgccgacacagcta-ataatttgaaaaaaatcacataattaagtgtaatta 13011230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 1486813 - 1486723
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||||||||||||| | || | |||||| ||| ||| |||||| ||||||||||  || || |||||||||||||||| |||||||||||    
T  1486813 ggatacggacacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattat 1486723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 15323124 - 15323206
Alignment:
Q  183 ggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatt 265  Q
    ||||||||||| || |||||||||||||||| ||| | ||| |||| ||  || || ||||||||||||||||||||||||||    
T  15323124 ggacacggacaccggacacgacatggacactgacatgtcgatacagttaataatttgaaaaaatcacataatttagtgtaatt 15323206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 14359604 - 14359537
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||  |||||  ||||||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  14359604 acacgacacagacacggacacgccgacacagcta-ataatttgaaaaatcacataatttagtgtaatta 14359537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 46348462 - 46348398
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||| ||||||| |||||||||||||||||  || || ||||||||| |||||||||||||||||    
T  46348462 gacacggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaatta 46348398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 48450670 - 48450602
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||| ||||||| ||||||| |||||||||  || || ||||||| |||||||||||||||||||    
T  48450670 acacgacacggacactgacacgccaacacagctaataatttgaaaaaataacataatttagtgtaatta 48450602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 10577839 - 10577785
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagcta 231  Q
    ||||||||||||||||| || |||||||| ||||||  |||||||||||||||||    
T  10577839 ggatacggacacggacaccggacacgacacggacaccgacacgccgacacagcta 10577785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 22881689 - 22881631
Alignment:
Q  208 gacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| ||||||||||||| |||  || || |||||||||||||||||||||||||||    
T  22881689 gacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaatta 22881631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 5376583 - 5376515
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaa-aaaatcacataatttagtgtaatta 266  Q
    |||||||| |||||||||||||||||||| |||| | ||||||| ||||| |||||||| ||||||||||    
T  5376583 acacgacacggacactaacacgccgacaccgcta-ataatttaagaaaataacataattcagtgtaatta 5376515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 42359553 - 42359464
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||| ||| || |||| ||| ||||||| |||||| |||||| |||  || || ||||||||||| |||| ||||||||||    
T  42359553 ggatacggacacgaacaccgtacacaacacggacactgacacgctgacacatctaataatttgaaaaaatcacaaaattcagtgtaatta 42359464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 5944243 - 5944328
Alignment:
Q  184 gacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaattt---aaaaaatcacataatttagtgtaattat 267  Q
    |||| |||||||| ||||||||  |||||| |||||||| |||||||| | |||||   |||||||||||||||| |||||||||||    
T  5944243 gacaaggacatcggacacgacacagacactgacacgccgccacagcta-ataatttgaaaaaaaatcacataattcagtgtaattat 5944328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 6612274 - 6612186
Alignment:
Q  178 gatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||||| ||| || |||||||| ||||| | ||||||||| |||| ||  || || ||||||| |||||||| ||||||||||    
T  6612274 gatacggacacgaacaccggacacgacacggacaatgacacgccgatacagttaataatttgaaaaaattacataattcagtgtaatta 6612186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 18556535 - 18556471
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||| ||||||| |||||||||||||||||  || || |||| ||||||||||||| ||||||||    
T  18556535 gacacggacactgacacgccgacacagctaataatttgaaaatatcacataatttaatgtaatta 18556471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 113292 - 113343
Alignment:
Q  215 acacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||||||||||  || || |||||||||||||||| ||||||||||    
T  113292 acacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 113343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 21366122 - 21366039
Alignment:
Q  179 atacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgta 262  Q
    ||||||||| | ||| ||||||||||| | ||||  |||||||| ||||||||  || |||||||||| |||||||| ||||||    
T  21366122 atacggacatgaacaccgaacacgacacgaacaccgacacgccggcacagctaataattttaaaaaataacataattcagtgta 21366039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 22515953 - 22515902
Alignment:
Q  215 acacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| ||||||||||  || || |||||||||||||||||||||||||||    
T  22515953 acacgcagacacagctaataatttgaaaaaatcacataatttagtgtaatta 22515902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 38503275 - 38503365
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||||||||  | ||| |||| |||||||||||| ||||||| ||||  || || | ||||||| ||| || |||||||||||    
T  38503275 ggatacggacacggacacgggacatgacacggacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaattat 38503365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 40917714 - 40917793
Alignment:
Q  185 acacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||| || |||||||| ||| ||| |||||||||||||||||  || || ||||||||||  |||| ||||||||||    
T  40917714 acacggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatcac--aattaagtgtaatta 40917793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 2896225 - 2896140
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgta 262  Q
    |||||| | |||||||| || |||| ||| ||||||| |||||||||||| ||||  || || | |||||||||||||| ||||||    
T  2896225 ggatacagtcacggacaacggacacaacacggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgta 2896140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 9103625 - 9103682
Alignment:
Q  207 ggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaat 264  Q
    ||||||| |||||||||||||| ||  || || |||||||||||||||||||| ||||    
T  9103625 ggacactgacacgccgacacagttaataatttgaaaaaatcacataatttagtttaat 9103682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 10572689 - 10572604
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| ||||||| || |||||||||| ||||| ||||||||||||  |||  || || | ||||||||||||||  |||||||||    
T  10572689 acggatacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcacataattcggtgtaatta 10572604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 16297387 - 16297298
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||| |||||||| |||||| | ||| ||| ||||| ||||||||| |  ||  | ||||||||||| |||| ||||||||||    
T  16297387 ggatacggacatggacatcggacacgatacggatactgacacgtcgacacagcaaataatatgaaaaaatcacaaaattcagtgtaatta 16297298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 36878441 - 36878506
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||| |||||| |||||||||||| ||||  || || | |||||||||||||| |||||||||||    
T  36878441 gacatagacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 36878506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 38078760 - 38078676
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||||||| || ||||||     ||||| ||||| |||||||||||  || || |||||||||||||||| | ||||||||    
T  38078760 ggatacggacacggacaccggacacga-----acactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaatta 38078676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 48040566 - 48040479
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaa--tcacataatttagtgtaa 263  Q
    ||||| ||| ||||||| || |||||||| ||||||| |||||||||||||| || | ||||| |||||  ||||||| ||||||||||    
T  48040566 ggatatggatacggacaccggacacgacacggacactgacacgccgacacagata-ataatttgaaaaaggtcacatattttagtgtaa 48040479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 21378554 - 21378622
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||| |||||   |||| ||||||||||||  ||||| ||||||| |||||||| ||||||||||    
T  21378554 acacgacacggacatggacacaccgacacagctaataaattgaaaaaattacataattcagtgtaatta 21378622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 39953210 - 39953162
Alignment:
Q  217 acgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatt 265  Q
    |||||||||| ||||  || |||| ||||||||||||||||||||||||    
T  39953210 acgccgacaccgctaataattttagaaaatcacataatttagtgtaatt 39953162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 241558 - 241639
Alignment:
Q  186 cacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||| || |||||||| ||||||| |||||||||||||||||  || ||  |||||||||||||||||||||||||||    
T  241558 cacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattat 241639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 22651925 - 22652009
Alignment:
Q  171 aagtaaggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatt 255  Q
    ||||| |||||||||||| |||| || |||||||| ||||||| |||||||||||||||||  || || ||||||||||||||||    
T  22651925 aagtacggatacggacactgacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatt 22652009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 22197839 - 22197757
Alignment:
Q  184 gacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||| || ||||||||  |||||||||||||| |||||||||  || || ||||| |||||||||||||||||||||    
T  22197839 gacacggacaccggacacgacacagacactaacacgccaacacagctaataatttgaaaaattcacataatttagtgtaatta 22197757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 27101470 - 27101553
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtg 260  Q
    |||||| ||||| ||||||||| |||| ||||||| | |||||||||||| ||||  || || |||||||||||||||||||||    
T  27101470 ggatacagacaccgacatcgaatacgatatggacattgacacgccgacaccgctaataatttgaaaaaatcacataatttagtg 27101553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 13437064 - 13436990
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatt 255  Q
    ||||||| ||||| || ||| |||||||||||| |||||||||||||||||  || || ||||||||||||||||    
T  13437064 acggacatggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataatt 13436990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 31556955 - 31557040
Alignment:
Q  180 tacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| ||||||| || ||| ||||||| |||| |||||||||||||| || | ||||| ||||||||||||||| ||||||||||    
T  31556955 tacggatacggacaccggacatgacatggtcactgacacgccgacacagtta-ataatttgaaaaatcacataattcagtgtaatta 31557040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 2572160 - 2572071
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||||||||||  | |||||||| ||| ||  ||||| ||||||| |||  || || |||||||||||||||||||||||||||    
T  2572160 ggatacggacacggacactggacacgacacggataccgacacgtcgacacacctaataatttgaaaaaatcacataatttagtgtaatta 2572071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 29510408 - 29510319
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| |||| ||||| || |||||||| ||||||| |||||||||||||||||  || || ||||||||||| |||| ||| ||||||    
T  29510408 ggatactgacatggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagtataatta 29510319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 4673528 - 4673440
Alignment:
Q  178 gatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||| |||||||||| ||||||||  |||||| |||||||||||||| ||  || || ||||||||| | |||| ||||||||||    
T  4673528 gatacggatacggacatcggacacgacacagacactgacacgccgacacagataataatttgaaaaaatcataaaattcagtgtaatta 4673440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 15816203 - 15816143
Alignment:
Q  207 ggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||||| ||||||||||||| |||  || || ||||||||||||||||||||||||||||    
T  15816203 ggacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattat 15816143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 20873045 - 20873113
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||| ||||||| ||||||||||| || ||  || || |||||||||||||||||||||||||||    
T  20873045 acacgacacggacactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaatta 20873113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 4298969 - 4298901
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||  || |||||||||||||||||| ||  || || |||||||||||||||||| ||||||||    
T  4298969 acacgacacagatactaacacgccgacacagttaataatttgaaaaaatcacataatttaatgtaatta 4298901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 25192441 - 25192361
Alignment:
Q  187 acggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||| |||||| | ||||||| |||||||||||||||||  || || ||||| | |||||||| ||| |||||||    
T  25192441 acggacatcggacacgatacggacactgacacgccgacacagctaataatttgaaaaagtgacataattcagtataattat 25192361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 8343285 - 8343360
Alignment:
Q  191 acatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||| ||||||||  |||||  |||| |||||| |||||  || || |||||||||||||||||||||||||||    
T  8343285 acatcggacacgacactgacaccgacacaccgacatagctaataatttgaaaaaatcacataatttagtgtaatta 8343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 36934645 - 36934715
Alignment:
Q  197 aacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||||||| ||||||||||||| |||||| ||||  || |  |||||||||||||||| | |||||||||    
T  36934645 aacacgacacggacactaacacgtcgacaccgctaataattcgaaaaaatcacataattcattgtaattat 36934715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 22595981 - 22596038
Alignment:
Q  209 acactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| |||||||||||||||||  || || ||||||| |||||||| ||||||||||    
T  22595981 acactgacacgccgacacagctaataatttaaaaaaataacataattcagtgtaatta 22596038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 24613509 - 24613564
Alignment:
Q  210 cactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||| |||| |||||||||||| | ||||| ||||||||||||||| ||||||||||    
T  24613509 cactgacacaccgacacagcta-ataatttgaaaaatcacataattaagtgtaatta 24613564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 36450833 - 36450769
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||| ||||||| ||||||||||||| |||  || || ||||||||||| |||| ||||||||||    
T  36450833 gacacggacactgacacgccgacacaactaataatttgaaaaaatcacagaattcagtgtaatta 36450769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 39954345 - 39954293
Alignment:
Q  215 acacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||| ||||  || || | ||||||||||||||||||||||||||    
T  39954345 acacgccgacaccgctaataatttgagaaaatcacataatttagtgtaattat 39954293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 23293089 - 23293001
Alignment:
Q  178 gatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||||||||| || |||||||| ||||| | |||||||||||||||||  || || |||||||||||||||| ||| ||||||    
T  23293089 gatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataatta 23293001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 35158089 - 35157999
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||||||||||||||| || |||| ||| ||||||| |||||||||| || |||  || ||  |||||||||||||||||||||||||||    
T  35158089 ggatacggacacggacaccggacacaacacggacactgacacgccgacgcaactaataatttggaaaaatcacataatttagtgtaattat 35157999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 27706281 - 27706192
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||||||| |  |||||||| ||||||| ||||| |||||||  ||  || || |||||||||||||||||||||||||||    
T  27706281 ggatacggacacggacaccagacacgacagggacactgacacgtcgacacaattaataatttaaaaaaatcacataatttagtgtaatta 27706192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 2362087 - 2361990
Alignment:
Q  171 aagtaaggatacggacacggacatc-ga-acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| ||||||||||||| ||||| || ||||||||| |||| | |||| ||||||||||||  || || ||||||| |||||||||||||||||||    
T  2362087 aagtacggatacggacacgaacatcagacacacgacattgacattgacacaccgacacagctaataatttgaaaaaattacataatttagtgtaatta 2361990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 12895377 - 12895288
Alignment:
Q  178 gatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||| ||||||| || | |||||| | ||| | |||||||||||||  ||  || || ||||||||||||||||| ||||||||||    
T  12895377 gatacggatacggacaccggatacgacacgaacaatgacacgccgacacaaataataatttgaaaaaatcacataattttgtgtaattat 12895288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 21945467 - 21945547
Alignment:
Q  186 cacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||| || ||| ||||  |||||| ||| |||||||||||||  || || ||||||| |||||||| ||||||||||    
T  21945467 cacggacaccggacatgacacagacactgacatgccgacacagctaataatttgaaaaaatgacataattcagtgtaatta 21945547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 40481613 - 40481680
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||  |||||| ||||||||| ||| ||| | ||||| ||||||||||||||| ||||||||||    
T  40481613 acacgacactgacactgacacgccgatacaacta-ataatttgaaaaatcacataattcagtgtaatta 40481680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 566 - 477
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||||||| |||||||| || ||||||| | |||||||||| ||||  || || ||||||||||| |||| ||||||||||    
T  566 ggatacggacacggacaccgaacacgccacggacactgatacgccgacactgctaataatttgaaaaaatcacaaaattcagtgtaatta 477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 6940214 - 6940299
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| ||||||||| || |||||| ||||||| |||||||||||||||||  || |||||||| | |||||||| ||||||||||    
T  6940214 acggatacggacatcaaatacgacacggacactgacacgccgacacagctaataattttaaaaagttacataattaagtgtaatta 6940299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 30335372 - 30335461
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||||||||  ||  |||||||| |||||||| |||||||||||| |||  || || ||||||| |||||||||||||||||||    
T  30335372 ggatacggacacggatctcagacacgacacggacactagcacgccgacacaactaataatttgaaaaaatgacataatttagtgtaatta 30335461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 20539774 - 20539689
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| |||||||  | |||||||| ||||||| ||||| |||||||||||  || || ||||||||| |||||||||||||||||    
T  20539774 acggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatcatataatttagtgtaatta 20539689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 21374798 - 21374714
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||||||| ||     |||| |||||||||||||||||||||||||  || || ||||||| |||||||| ||||||||||    
T  21374798 ggatacggacacggacaccg-----gacacggacactaacacgccgacacagctaataatttgaaaaaattacataattcagtgtaatta 21374714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 15657826 - 15657908
Alignment:
Q  184 gacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||| || || |||||||| |||||||||||||||||| || |||  || ||  ||||||||||||||| ||||||||||    
T  15657826 gacacggtcaccggacacgacacggacactaacacgccgactcaactaataatttgtaaaaatcacataattcagtgtaatta 15657908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 20242810 - 20242741
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||||||| ||||||||||||| |||     |||| |||||||||||||| |||||||||||    
T  20242810 acacgacatggacactgacacgccgacacaactaatttttttagaaaatcacataattcagtgtaattat 20242741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 21624226 - 21624311
Alignment:
Q  182 cggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaattt-aaaaaatcacataatttagtgtaatta 266  Q
    |||| ||||||| |||||||||||  |||||| |||||||||||||||||  || ||| |||||||  ||||||| ||||||||||    
T  21624226 cggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattttaaaaaaatagcataattcagtgtaatta 21624311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 34785085 - 34784996
Alignment:
Q  178 gatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||||||  |  |||||||| ||||||| |||| |||||||| |||     |||| ||||||||||||||||||||||||||    
T  34785085 gatacggacacggaccccagacacgacacggacactgacacaccgacacaactaatttttttagaaaatcacataatttagtgtaattat 34784996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 18841096 - 18841028
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||||||||||||||| |||||| |||||| |||  || || ||||||| |||||||| ||||||||||    
T  18841096 acacgacatggacactgacacgctgacacaactaataatttgaaaaaattacataattaagtgtaatta 18841028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 24894374 - 24894433
Alignment:
Q  207 ggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||| |||||||||||||||||  || || |||||||||||||||| |||| |||||    
T  24894374 ggacactgacacgccgacacagctaataatttaaaaaaatcacataattcagtgcaatta 24894433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 31018568 - 31018635
Alignment:
Q  200 acgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||||| ||||||| |||| ||||  || || | |||||||||| |||||||||||||||    
T  31018568 acgacatggacactgacacgccaacaccgctaataatttcagaaaatcacatgatttagtgtaattat 31018635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 18421919 - 18422007
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaa-atcacataatttagtgtaatta 266  Q
    ||||||||||| | |||||| | |||||| ||||||| |||||||||||||  || | |||||||||| ||||||||||| ||||||||||    
T  18421919 ggatacggacatg-acatcggatacgacacggacactgacacgccgacacaatta-ataatttaaaaatatcacataattcagtgtaatta 18422007  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 19536492 - 19536412
Alignment:
Q  187 acggacatcgaacacgacatggacactaacacgccgacacagctacaaaattt--aaaaaatcacataatttagtgtaatta 266  Q
    ||||||| || |||||||| ||||| | ||||||||||||| ||| | |||||  |||||||||||||||| ||||||||||    
T  19536492 acggacaccggacacgacacggacaatgacacgccgacacaacta-ataatttgaaaaaaatcacataattcagtgtaatta 19536412  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 21616717 - 21616807
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||| ||||    |||||||| ||||||  |||||||||||| ||||  || || | |||||||||||||| |||||||||||    
T  21616717 ggatacggacacagacacatgacacgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 21616807  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 36409710 - 36409641
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||| ||| ||| ||| |||||||| |||   || || ||||||||||||||||||||||||||||    
T  36409710 acacgacacggatactcacatgccgacaccgctgataatttgaaaaaatcacataatttagtgtaattat 36409641  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 36756447 - 36756358
Alignment:
Q  178 gatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    |||||||||||| |||||| | ||||||  |||||| ||||| ||||||| |||  || || || |||| |||||||| |||||||||||    
T  36756447 gatacggacacgaacatcggatacgacacagacactgacacgtcgacacaactaataatttgaagaaataacataattcagtgtaattat 36756358  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 28412311 - 28412395
Alignment:
Q  183 ggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||||||||| |  |||||||| ||||||||||||| | |||| | ||  || || | |||||||||||||| |||||||||||    
T  28412311 ggacacggacaccagacacgacacggacactaacacgtcaacaccgttaataatttgataaaatcacataattcagtgtaattat 28412395  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 30404929 - 30404865
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||| ||||||| |||||||||||| | ||  || || |||||||||||||||| ||||||||||    
T  30404929 gacacggacactgacacgccgacacggttaataatttgaaaaaatcacataattcagtgtaatta 30404865  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 34337280 - 34337200
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataattta 257  Q
    ||||||||||||||| | || | |||||| ||||| | |||||||||||||| |   || || ||||||||||||||||||    
T  34337280 ggatacggacacggataccgtatacgacacggacattgacacgccgacacagttgataatttgaaaaaatcacataattta 34337200  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 37558957 - 37559021
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||| ||||||| |||||||||||||||||  || ||  ||||||||||||||| | ||||||||    
T  37558957 gacacggacactgacacgccgacacagctaataatttgtaaaaatcacataattcaatgtaatta 37559021  T

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Target: scaffold0223 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 20137 - 20216
Alignment:
Q  187 acggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||| || |||||||| ||||| | |||||||||||||||||  || || |||||||||||||||| ||||||||||    
T  20137 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 20216  T

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Target: scaffold0116 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 9853 - 9907
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagcta 231  Q
    ||||||||||||||||| || |||||||||||||||  |||||||||||||||||    
T  9853 ggatacggacacggacaccggacacgacatggacaccgacacgccgacacagcta 9907  T

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Target: scaffold0021 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 130437 - 130526
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||||||||||| || |||||||| ||||| | ||| |||||||||| ||  |  || |||||||||||||||| ||||||||||    
T  130437 ggatacggacacggacaccggacacgacacggacaatgacaagccgacacagttaatagtttgaaaaaatcacataattcagtgtaatta 130526  T

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Target: scaffold0103 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 51791 - 51855
Alignment:
Q  202 gacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    |||| ||||||| |||||||||||||||||  || || |||||||||||||||| ||||||||||    
T  51791 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 51855  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 17823 - 17764
Alignment:
Q  207 ggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||| |||||||| |||||| |||  || || |||||||||||||||||||||||||||    
T  17823 ggacaataacacgctgacacaactaataatttgaaaaaatcacataatttagtgtaatta 17764  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 23380 - 23465
Alignment:
Q  181 acggacacggacatcgaacacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||| ||||||| || ||||||||  |||||| |||||||||||||| ||  || |  |||||||||||||||| |||||||||||    
T  23380 acggatacggaca-cggacacgacacagacactgacacgccgacacagataataactcaaaaaaatcacataattcagtgtaattat 23465  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 178902 - 178833
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatca-cataatttagtgtaatta 266  Q
    |||||||| ||||||| ||||||||||||| |||  || || ||||||||| ||||||| ||||||||||    
T  178902 acacgacacggacactgacacgccgacacaactaataatttgaaaaaatcatcataattcagtgtaatta 178833  T

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Target: scaffold0246 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 19552 - 19619
Alignment:
Q  198 acacgacatggacactaacacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaatta 266  Q
    ||||||||  |||||| ||||||||| ||| ||| | ||||| ||||||||||||||| ||||||||||    
T  19552 acacgacactgacactgacacgccgatacaacta-ataatttgaaaaatcacataattcagtgtaatta 19619  T

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Target: scaffold0227 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 7377 - 7325
Alignment:
Q  215 acacgccgacacagctacaaaatttaaaaaatcacataatttagtgtaattat 267  Q
    ||||||||||||| |||  || ||  |||||||||||||||||||||||||||    
T  7377 acacgccgacacaactaataatttggaaaaatcacataatttagtgtaattat 7325  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 225365 - 225321
Alignment:
Q  184 gacacggacatcgaacacgacatggacactaacacgccgacacag 228  Q
    |||||||||| || |||||||| ||||||| ||||||||||||||    
T  225365 gacacggacaccggacacgacacggacactgacacgccgacacag 225321  T

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