View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_low_18 (Length: 272)
Name: NF4676_low_18
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 42990871 - 42991108
Alignment:
| Q |
18 |
aattcattcaaatcaaactcatacaatttgattcttttcttgtcttcttcacattatatattatattccttcgttgtttctttttcgaaagcaactttaa |
117 |
Q |
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| T |
42990871 |
aattcattcaaatcaaactcatacaatttgattcttttcttgccttcttcacattatatattatattccttcgttgtttctttttcaaaagcaactttaa |
42990970 |
T |
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| Q |
118 |
ttaacatacatagc-tcttcatgaaatcaaaagtttttactagcattttgcttatggtgcagttgtcgtcacaagggccaactcacgatgaaattgattt |
216 |
Q |
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| T |
42990971 |
ttaacatacatagcttcttcatgaagttgaaagcttttacgagcattttccttatggtgcagttgtcatcacaagggccaactcacgacgaaattgattt |
42991070 |
T |
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| Q |
217 |
tgagttcttgggaaatgttagcggtgacccttacattc |
254 |
Q |
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| T |
42991071 |
tgagttcttgggaaatgttagcggtaatccttacattc |
42991108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 35017692 - 35017752
Alignment:
| Q |
171 |
tggtgcagttgtcgtcacaagggccaactcacgatgaaattgattttgagttcttgggaaa |
231 |
Q |
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| T |
35017692 |
tggtacagctgtcatcccaaggaccaacccatgatgagattgattttgagttcttgggaaa |
35017752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 38214506 - 38214421
Alignment:
| Q |
169 |
tatggtgcagttgtcgtcacaagggccaactcacgatgaaattgattttgagttcttgggaaatgttagcggtgacccttacattc |
254 |
Q |
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| T |
38214506 |
tatggtgcagttgtcatcacagggaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattc |
38214421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 38218725 - 38218640
Alignment:
| Q |
169 |
tatggtgcagttgtcgtcacaagggccaactcacgatgaaattgattttgagttcttgggaaatgttagcggtgacccttacattc |
254 |
Q |
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| T |
38218725 |
tatggtgcagttgtcatcacagggaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattc |
38218640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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