View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4676_low_2 (Length: 478)
Name: NF4676_low_2
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Original strand, 40720002 - 40720451
Alignment:
| Q |
19 |
aatacctcatgtccattctcctatttcttattggttagcatggtatcacatgctatggttctcagccttgtacgtttcttgctggtctagtagatcttac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40720002 |
aatacctcatgtccattctcctatttcttattggttagcatggtatcacatgctatggttctcagccttgtacgtttcttgctggtctagtagatcttac |
40720101 |
T |
|
| Q |
119 |
aatttttctggtgattccttcgttgaagaactattggtgaatgagattttggtggtggctatcctatcaaacgttaatgttccatccatcttctcgtttc |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40720102 |
aatttttatggtgattccttcgttgaagaactattggtgaatgagattttggtggtggctatcctatcaaacgttaatgttccatccatctcctcgtttc |
40720201 |
T |
|
| Q |
219 |
cttggctatccataattaggctgccaaacctgcttatcaccatctttcccttaacagttgttctaagtccatgaccatctctatgattgggaaggggtca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40720202 |
cttggctatccataattaggctgccaaacctgcttatcaccatcttgcccttaacagttgttctaagtccatgaccatctctatgactgggaaggggtca |
40720301 |
T |
|
| Q |
319 |
atattaatattggacatttcttaaacttctttatcgcctaacttgaacctatcttccttgatcaacttttaaacagctctttaaaagatgatgcaattag |
418 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40720302 |
atattaatattggacctttctgaaacttctttatcgcctaacttgaacctgtcttccttgatcaacttttaaacagctctttaaaagatgatgcaattag |
40720401 |
T |
|
| Q |
419 |
tcgtggtgtgattataggaattgtgccagttgacttatctcttgcctttg |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40720402 |
tcgtggtgtgattataggaattgtgccagttgacttatctcttgcctttg |
40720451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University