View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_low_23 (Length: 247)
Name: NF4676_low_23
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 13927531 - 13927748
Alignment:
| Q |
20 |
cttcttgctcatgattattgatatttcgttttgttgttttctcatggtacaatacgcttgccaaacctgtttggtaataatttcagagatcagataggcc |
119 |
Q |
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| T |
13927531 |
cttcttgctcatgattattgatatttcgttttgttgttttctcagggtgccatacacttgccaaacctgtttggtaatgatttcggagatcagatagacc |
13927630 |
T |
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| Q |
120 |
gatttgcaagccaacgagttaaaggaaacgattggtttggtatttttaggttctgctattcttactgatcttctctattttgtgtattttatctgcatgt |
219 |
Q |
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| T |
13927631 |
aatttgcaagccaactagccaaaggaaacgattggtttggtatttttaggttatgctattcttactgatcttctctattttgtgtattttatctgcatgt |
13927730 |
T |
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| Q |
220 |
gtttattttgtctctctg |
237 |
Q |
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|||||||||||||||||| |
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| T |
13927731 |
gtttattttgtctctctg |
13927748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 37289370 - 37289587
Alignment:
| Q |
20 |
cttcttgctcatgattattgatatttcgttttgttgttttctcatggtacaatacgcttgccaaacctgtttggtaataatttcagagatcagataggcc |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||| |||| ||||||||||||||| |
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| T |
37289370 |
cttcttgctcatgattattgatgtttcgttttgttgttttctcagggtgcaatacgcttgtcaaacttgtttggtaatgattttggagatcagataggcc |
37289469 |
T |
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| Q |
120 |
gatttgcaagccaacgagttaaaggaaacgattggtttggtatttttaggttctgctattcttactgatcttctctattttgtgtattttatctgcatgt |
219 |
Q |
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| T |
37289470 |
gatttgcaagccaacgagccaaaggaaatgattgatttggtatttttaggttctgctattcttactgatcttctctattttgtgtattttatctgcatgt |
37289569 |
T |
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| Q |
220 |
gtttattttgtctctctg |
237 |
Q |
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||||||||||| |||||| |
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| T |
37289570 |
gtttattttgtgtctctg |
37289587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 50568556 - 50568487
Alignment:
| Q |
160 |
tatttttaggttctgctattcttactgatcttctctattttgtgtattttatctgcatgtgtttattttg |
229 |
Q |
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||||||||||||| |||||||| | ||||||||| |||||||||| | || |||||||||||| |||| |
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| T |
50568556 |
tatttttaggttcctctattcttgatcatcttctctcttttgtgtatatgatatgcatgtgtttactttg |
50568487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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