View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_low_25 (Length: 239)
Name: NF4676_low_25
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27514169 - 27513949
Alignment:
| Q |
1 |
atgaagaggttagtgatgaaattgctcaattatgcttcatgggattttgaaagaaatcaattgaggttagtgatcgaaaacttagactaaaaccatctta |
100 |
Q |
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| T |
27514169 |
atgaagaggttagtgatgaaattgctcaattatgcttcatgggatgaagaaagaaatcaattgaggttagtgatcgaaaacttaaactaaaaccatctta |
27514070 |
T |
|
| Q |
101 |
tgatgagttgcaaaatgttcttattgaaatgcatgaagatgccatgaatgcttttaaaaccattggtacccaaaggagaactattctcaaattggaagcc |
200 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27514069 |
tgatgagttgcaaaatattcttgttgaaatgcatgaagatgccatgaatgcttttaaaaccattggtatccaaaggagaactattctcaaattggaagcc |
27513970 |
T |
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| Q |
201 |
gaaattatacaaatgagaaaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
27513969 |
gaaattatacaaatgagaaaa |
27513949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 206
Target Start/End: Complemental strand, 14985943 - 14985830
Alignment:
| Q |
93 |
ccatcttatgatgagttgcaaaatgttcttattgaaatgcatgaagatgccatgaatgcttttaaaaccattggtacccaaaggagaactattctcaaat |
192 |
Q |
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| T |
14985943 |
ccatcctatgatgagttacaaaatgttctagtagaaattcatggagatgccatgaaaacttttaaaacaatcagaacccaaaagagaacaattctcaatt |
14985844 |
T |
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| Q |
193 |
tggaagccgaaatt |
206 |
Q |
| |
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|||| |||||||| |
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| T |
14985843 |
tggagaccgaaatt |
14985830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 206
Target Start/End: Complemental strand, 15415554 - 15415441
Alignment:
| Q |
93 |
ccatcttatgatgagttgcaaaatgttcttattgaaatgcatgaagatgccatgaatgcttttaaaaccattggtacccaaaggagaactattctcaaat |
192 |
Q |
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| T |
15415554 |
ccatcctatgatgagttacaaaatgttctagtagaaattcatggagatgccatgaaaacttttaaaacaatcagaacccaaaagagaacaattctcaatt |
15415455 |
T |
|
| Q |
193 |
tggaagccgaaatt |
206 |
Q |
| |
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|||| |||||||| |
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| T |
15415454 |
tggagaccgaaatt |
15415441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 19766708 - 19766900
Alignment:
| Q |
14 |
tgatgaaattgctcaattatgcttcatgggattttgaaagaaatcaattgaggttagtgatcgaaaacttagactaaaaccatcttatgatgagttgcaa |
113 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| || ||| || ||||| |||||||| || ||| |
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| T |
19766708 |
tgatgaaattgctcaactatgcttcatgggacaaagaaagaaatcaattgaggttagtgaccgaaactctaaacttaatccatcatatgatgatttacaa |
19766807 |
T |
|
| Q |
114 |
aatgttcttattgaaatgcatgaagatgccatgaatgcttttaaaaccattggtacccaaaggagaactattctcaaattggaagccgaaatt |
206 |
Q |
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|||||||| | |||||||||| ||||| |||||||||||||| || || | ||||||| ||||| |||||||||||||||||||||||| |
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| T |
19766808 |
aatgttctagtagaaatgcatggagatgtaatgaatgcttttaatactatcagaacccaaaagagaatcattctcaaattggaagccgaaatt |
19766900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 25179824 - 25179904
Alignment:
| Q |
126 |
gaaatgcatgaagatgccatgaatgcttttaaaaccattggtacccaaaggagaactattctcaaattggaagccgaaatt |
206 |
Q |
| |
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|||||||||| |||||||||||| |||| |||||| || || ||||||| |||||| |||||||||||||| ||| ||||| |
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| T |
25179824 |
gaaatgcatggagatgccatgaaagcttctaaaacaatcggcacccaaaagagaacgattctcaaattggaggccaaaatt |
25179904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 13530511 - 13530414
Alignment:
| Q |
96 |
tcttatgatgagttgcaaaatgttcttattgaaatgcatgaagatgccatgaatgcttttaaaaccattggtacccaaaggagaactattctcaaatt |
193 |
Q |
| |
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||||||||||| || |||||| ||| || |||||||||| |||| | |||||||| ||||||| |||||| |||||| ||||||||| |||||||| |
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| T |
13530511 |
tcttatgatgaatttgaaaatgctctcatagaaatgcatggagattctatgaatgcctttaaaaagattggttcccaaaagagaactatcctcaaatt |
13530414 |
T |
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