View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_low_28 (Length: 213)
Name: NF4676_low_28
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 52132408 - 52132224
Alignment:
| Q |
14 |
aaggcaatgcaaacgtttataataacacgggaaagcacacaacgtgaaaccatttaccattagccaatgtgcattaattggtactcatttaattccatat |
113 |
Q |
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| T |
52132408 |
aaggcaatgcaaatggttataataacatcggaaagcacacaacgtgaaaccatttaccattagccaatgtgtattaactggtactcatttaattccatat |
52132309 |
T |
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| Q |
114 |
ctcaaggataacaccaataggcatgatgtttcaaa----gttatcatgaatagagatgttcaccatcatcgtcatatgatgcatt |
194 |
Q |
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| T |
52132308 |
ctcaaggataacaccaacagacttgatgtttcaaagttagttattatgaatagagatgttcaccatcatcctcatacgatgcatt |
52132224 |
T |
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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 39198594 - 39198676
Alignment:
| Q |
46 |
aagcacacaacgtgaaaccatttaccattagccaatgtgca-----ttaattggtactcatttaattccatatctcaaggataa |
124 |
Q |
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| T |
39198594 |
aagcacacaacgt-aaaccatgtaccattagccaatgtgtagtgtattaattggtactcatttaattccatatctcaaggataa |
39198676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 16865022 - 16864970
Alignment:
| Q |
92 |
tggtactcatttaattccatatctcaaggataacaccaataggcatgatgttt |
144 |
Q |
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| T |
16865022 |
tggtactcatttaattccatatctcaaagataacaccaatagacatgaagttt |
16864970 |
T |
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