View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_low_3 (Length: 470)
Name: NF4676_low_3
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 102 - 292
Target Start/End: Complemental strand, 30497768 - 30497579
Alignment:
| Q |
102 |
tcaccttatatttcaaaccaaaaagaagtttatagcatgataattgctccacctatattatcaccagtaggtcaacgaatatatatattcacgnnnnnnn |
201 |
Q |
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| T |
30497768 |
tcaccttatatttcaaaacaaaaagaagtttatagcatgataattgctccacctatattatcaccagtaggtcaacgaatatatatattcacg-tttttt |
30497670 |
T |
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| Q |
202 |
actatttacataatttataatcaacaattaaaaagacaaggatttgattcctctctattaaaaagagcgattagtggctaaagaatcctac |
292 |
Q |
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| T |
30497669 |
actatttacataatttataatcaacaattaaaaagacaaggatttgattcctctccactaaaaagagcgattaatggctaaagaatcctac |
30497579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 366 - 452
Target Start/End: Complemental strand, 30497563 - 30497477
Alignment:
| Q |
366 |
atcaaacatttatttttaattgagtttgcctcttctttccttaagctataaggacgtgtgtgaatcaaagaaattgtgaggagaagt |
452 |
Q |
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| T |
30497563 |
atcaaacatttatttttaattgagtttgcctcttctttccttaagctataaggacgtgtgtgaatcaaagaaattctgaggagaagt |
30497477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 102
Target Start/End: Complemental strand, 30497788 - 30497758
Alignment:
| Q |
72 |
tcattaaacacttgattcactcaccttatat |
102 |
Q |
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| T |
30497788 |
tcattaaacacttgattcactcaccttatat |
30497758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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