View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_low_5 (Length: 404)
Name: NF4676_low_5
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 33795752 - 33795376
Alignment:
| Q |
19 |
aatactgtgataattattcttgcacctatcatgataagaaggaaattcaaatatcaataaaagtatagcacattgcaagtagttcctgcagactattctt |
118 |
Q |
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| T |
33795752 |
aatactgtgataattattcttgcacctatcatgataagaaggaaattcaaatatcaataaaagtatagcacattgcaagtagttcctgcagactattctt |
33795653 |
T |
|
| Q |
119 |
cccaattacctaaaaatatttttccaaataaactgataatacatacatataccttgatttttggagagagatacatgccctctttttcttccagcaatca |
218 |
Q |
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| T |
33795652 |
cccaattacctaaaaatatttttccaaataaactgataatacatacatataccttgatttttggagagagatacatgccctctttttcttccagcaatca |
33795553 |
T |
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| Q |
219 |
tccaatttccagaatttgcatttacctcgtacagaacctcatcctgtcaaaatttgaaacaattatagcatcaaacaaaataaaggaaaagtagacaaga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33795552 |
tccaatttccagaatttgcatttacctcgtacagaacctcatcctgtcaaaatttgaaacaattatagcatcaaacagaataaaggaaaagtagacaaga |
33795453 |
T |
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| Q |
319 |
attgtcaacattcaagagttggatgaataaatgaattggcagccaggtgcacaaagctcccacatacacaggttctg |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
33795452 |
attgtcaacattcaagagttggatgaataaatgaattggcagccaggtgcacaaagctcccgcatacacagggtctg |
33795376 |
T |
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