View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_low_6 (Length: 403)
Name: NF4676_low_6
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 120 - 388
Target Start/End: Original strand, 49271135 - 49271404
Alignment:
| Q |
120 |
gaaaggtggtgggaatagcatctatttacatgtcaggtggtaaaa-aagacttagttttataattagtaatagaattctcgcctgataatacaagttggt |
218 |
Q |
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| T |
49271135 |
gaaaggtggtgggaatagcatctatttacatgtcaggtggtaaaaaaagacttagttttataattagtaatagaattctcgcctgataatacaagttggt |
49271234 |
T |
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| Q |
219 |
acatcacaattaacatgtgattattgtttatttgatttttaataatctcaagtgctacatattcaaatatttacccacaacaaaaggcaaaaccgtatca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271235 |
acatcacaattaacatgtgattattgtttatttgatttttaataatctcaagttctacatattcaaatatttacccacaacaaaaggcaaaaccgtatca |
49271334 |
T |
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| Q |
319 |
aacctgtgcttttctatcagttttcattttcagcacttgtttaaaccatagtgctggaagatatggaaaa |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271335 |
aacctgtgcttttctatcagttttcattttcagcacttgtttaaaccatagtgctggaagatatggaaaa |
49271404 |
T |
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