View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676_low_7 (Length: 379)
Name: NF4676_low_7
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 41876738 - 41876375
Alignment:
| Q |
1 |
ttactattccaatatgcttgctatccttccaagcatcatttttctgaaaagtttttgataagacagcagcaaggccgattgctccacttggttcaacaac |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876738 |
ttactattcctatatgcttgctatccttccaagcatcatttttctgaaaagtttttgataagacagcagcaaggccgattgctccacttggttcaacaac |
41876639 |
T |
|
| Q |
101 |
aatctttagaatttcaaaacatagtttcatggctttcacaatttcactatcttccacagttattatgtcatcaacaagatctcgtacaacaggcctgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876638 |
aatctttagaatttcaaaacatagtttcatggctttcacaatttcactatcttccacagttattatgtcatcaacaagatctcgtacaacaggcctgtgt |
41876539 |
T |
|
| Q |
201 |
catagaaaattcgacaagttaatcgtaagaccacaaaaatttattgcaaaatattttattttaccatgtaaaatttccgagacatgctcggagcccgtct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41876538 |
catagaaaattcgacaagttaatcgtaagaccacaaaaatttattgcaaaatatttgattttaccatgtaaaatttccgagacatgctcggagcccatct |
41876439 |
T |
|
| Q |
301 |
gctatggtattgacctcaggcagtgttattatcctcccagctgctttagattgcgctgcatcat |
364 |
Q |
| |
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| T |
41876438 |
gctatggtattgacctcaggcaatgttattatcctcccagctgctttagattgcgctgcatcat |
41876375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 40867308 - 40867503
Alignment:
| Q |
2 |
tactattccaatatgcttgctatccttccaagcatcatttttctgaaaagtttttgataagacagcagcaaggccgattgctccacttggttcaacaaca |
101 |
Q |
| |
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||||||||| |||||||||| ||| ||||||||| |||||||||||||| || |||| ||||| |||||||| ||||||||||||||||| |||||| |
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| T |
40867308 |
tactattcctatatgcttgcaatctttccaagcaggatttttctgaaaagattcggatagaacagctgcaaggccaattgctccacttggttctacaaca |
40867407 |
T |
|
| Q |
102 |
atctttagaatttcaaaacatagtttcatggctttcacaatttcactatcttccacagttattatgtcatcaacaagatctcgtacaacaggcctg |
197 |
Q |
| |
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||||| ||||||||| |||| |||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
40867408 |
atcttaagaatttcataacacagttgcatggctttaacaatttcactgtcttccacagttattatgtcgtcaacaagatctcgtacgacaggcctg |
40867503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 261 - 364
Target Start/End: Original strand, 40867588 - 40867691
Alignment:
| Q |
261 |
ttaccatgtaaaatttccgagacatgctcggagcccgtctgctatggtattgacctcaggcagtgttattatcctcccagctgctttagattgcgctgca |
360 |
Q |
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||||||||| |||| ||| ||| ||||||| |||||||| ||||| |||||| ||| |||| |||||||||||| ||||||||||||||||| ||||| |
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| T |
40867588 |
ttaccatgtgaaatctccaagaaatgctcgtagcccgtcagctatagtattggtctcgggcaatgttattatccttccagctgctttagattgtgctgcg |
40867687 |
T |
|
| Q |
361 |
tcat |
364 |
Q |
| |
|
|||| |
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|
| T |
40867688 |
tcat |
40867691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 225
Target Start/End: Original strand, 9735668 - 9735855
Alignment:
| Q |
38 |
atttttctgaaaagtttttgataagacagcagcaaggccgattgctccacttggttcaacaacaatctttagaatttcaaaacatagtttcatggctttc |
137 |
Q |
| |
|
||||||||||||||||| |||| ||| || ||||||| ||||||| || ||| | ||||||||| | || || |||||| |||||||| ||||| |
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| T |
9735668 |
atttttctgaaaagtttcagatagcacaacaacaaggccagcagctccacatgattctaaaacaatcttaaaaagtttaaaacacagtttcattgctttg |
9735767 |
T |
|
| Q |
138 |
acaatttcactatcttccacagttattatgtcatcaacaagatctcgtacaacaggcctgtgtcatagaaaattcgacaagttaatcg |
225 |
Q |
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| |||||| |||||||| || ||||| || |||||||||||| |||||| |||||||||||| |||||| ||||||| ||||||| |
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| T |
9735768 |
atgatttcaaagtcttccactgtgattatatcttcaacaagatcttgtacaataggcctgtgtcacagaaaactcgacaaattaatcg |
9735855 |
T |
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