View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4677-Insertion-1 (Length: 458)
Name: NF4677-Insertion-1
Description: NF4677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4677-Insertion-1 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 8 - 458
Target Start/End: Original strand, 3013788 - 3014238
Alignment:
| Q |
8 |
gaataaaggtaatggtaactaaaatcgattgattattattattatgcttgaattttgtgtaattattcaagacaacatgtttgaattttgcttgatgctg |
107 |
Q |
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| T |
3013788 |
gaataaaggtaatggtaactaaaatcgattgattattattattatgcttgaattttgtgtaattattcaagacaacatgttcgaattttgcttgatgctg |
3013887 |
T |
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| Q |
108 |
ctttaatatcaataataaacttcgaggtttttgttttgctttgattttccaggtgatactgttaagccaccgagtaatcggaaacctgtttcttgcatca |
207 |
Q |
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| T |
3013888 |
ctttaatatcaataataaacttcgaggtttttgttttgctttgattttccaggtgatactgttaagccaccgagtaatcggaaacctgtttcttgcatca |
3013987 |
T |
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| Q |
208 |
taggtgatgcgtacactggcaaagccacgcttctcggttgtattcgaggtaacaacagttctccccatttttcagcacattttcctgctgttgatgctga |
307 |
Q |
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| T |
3013988 |
taggtgatgcgtacactggcaaaaccacgcttctcggttgtattcgaggtaacaacagttctccccatttttcagcacattttcctgctggtgatgctga |
3014087 |
T |
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| Q |
308 |
aagacgtatgctggttcttgataacacaccattcaggggcttatatctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacag |
407 |
Q |
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| T |
3014088 |
aagacgtatgctggttcttgataacacaccattcaggggcttatatctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacac |
3014187 |
T |
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| Q |
408 |
ccacatactatagacttacttgatctattaaaaatcaccaacaaacaattc |
458 |
Q |
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| T |
3014188 |
ccacatactatagacttactcgatctattaaaactcaccaacaaacaattc |
3014238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 450
Target Start/End: Complemental strand, 593650 - 593559
Alignment:
| Q |
353 |
tctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacagccacatactatagacttacttgatctattaaaaatcaccaaca |
450 |
Q |
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| T |
593650 |
tctatgtgatatcgcaattttggttgtagacattatgc------atggcatacagcaacaaactatagattcactcgatctattaaaaaggaccaaca |
593559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 182276 - 182337
Alignment:
| Q |
201 |
tgcatcataggtgatgcgtacactggcaaagccacgcttctcggttgtattcgaggtaacaa |
262 |
Q |
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| T |
182276 |
tgcatcataggtgatgtcaacactggaaaaaccaagcttctgggtggtattcgaggtaacaa |
182337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 393
Target Start/End: Original strand, 182467 - 182507
Alignment:
| Q |
353 |
tctatgtgatattgctattttggttgttgacattatgcatg |
393 |
Q |
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| T |
182467 |
tctatgtgatattgcaattttggttgtagatattatgcatg |
182507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 153 - 395
Target Start/End: Complemental strand, 40672775 - 40672518
Alignment:
| Q |
153 |
tttccaggtgatactgttaagccaccg------agtaatcggaaacctgtttcttgcatcataggtgatgcgtacactggcaaagccacgcttctcggtt |
246 |
Q |
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| T |
40672775 |
tttccaggtgatactgttaagccgccgccgcctagttatcggaaacctgtttcctgcatcataggtgatgcatacactggcaaaaccatgcttctcggtt |
40672676 |
T |
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| Q |
247 |
gtattcgaggtaacaacagttctccccatttttcagca---------cattttcctgctgttgatgctgaaagacgtatgctggttcttgataacacacc |
337 |
Q |
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| T |
40672675 |
gtattcgaggtaaagacaatcttccccatattccatcatcaacaacacattttcctgctggtgatgctgaaagacgtatgctggttgttgataacgcacc |
40672576 |
T |
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| Q |
338 |
attcaggggcttatatctatgtgatattgctattttggttgttgacattatgcatgat |
395 |
Q |
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| T |
40672575 |
aattaggggttcatatctatgtgatattgctattttggttgttgacattatgcatgat |
40672518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 40672849 - 40672796
Alignment:
| Q |
8 |
gaataaaggtaatggtaactaaaatcgattgattattattattatgcttgaattttg |
64 |
Q |
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| T |
40672849 |
gaatgaaggtaatgataactaaaatcgattgattatta---ttatgcttgaattttg |
40672796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 442
Target Start/End: Original strand, 44605015 - 44605098
Alignment:
| Q |
353 |
tctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacagccacatactatagacttacttgatctattaaaaat |
442 |
Q |
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| T |
44605015 |
tctatgtgatattgcaattttggttgttgacattatgc------atggcttagagccacaaactatagagtcactcaatctattaaaaat |
44605098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 442
Target Start/End: Original strand, 44626780 - 44626863
Alignment:
| Q |
353 |
tctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacagccacatactatagacttacttgatctattaaaaat |
442 |
Q |
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| T |
44626780 |
tctatgtgatattgcaattttggttgtggacattatgc------atggcttagagccacaaactatagagtcactcaatctattaaaaat |
44626863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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