View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4677-Insertion-2 (Length: 356)
Name: NF4677-Insertion-2
Description: NF4677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4677-Insertion-2 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 163 - 356
Target Start/End: Original strand, 5479244 - 5479437
Alignment:
| Q |
163 |
gacccaacaattttcactggcaactaagtcagtaacaagtaacaagatattgcacaattgcaacattttttactcccaaattccaacctccatgaatcca |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5479244 |
gacccaacaattttcactggcaactaagtcagtaacaagtaacaagatattgcacaattgcaacattttttactcccaaattccaacctccatgaatcca |
5479343 |
T |
|
| Q |
263 |
tcctcagaagcacaacccctaaacatgccattgcagttaaatccataagcaacttctcctttactagaaacagcaataagtccagcatatcctt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5479344 |
tcctcagaagcacaacccctaaacatgccattgcagttaaatccataagcaacttctcctttactagaaacagcaatgagtccagcatatcctt |
5479437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 5479089 - 5479190
Alignment:
| Q |
8 |
atgttgctactattatttcacattttctatccctcttaaacaactaataattacagcacaatgcaagttgcaatgaaacaactagtagtaactaacccac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5479089 |
atgttgctactattatttcacattttctatccctcttaaacaactaataattacagcacaatgcaagttgcaatgaaacaactagtagtaactaacccac |
5479188 |
T |
|
| Q |
108 |
cc |
109 |
Q |
| |
|
|| |
|
|
| T |
5479189 |
cc |
5479190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 342
Target Start/End: Original strand, 42162696 - 42162796
Alignment:
| Q |
242 |
attccaacctccatgaatccatcctcagaagcacaacccctaaacatgccattgcagttaaatccataagcaacttctcctttactagaaacagcaataa |
341 |
Q |
| |
|
||||| |||||| ||| |||||||||| |||| ||| |||||||| ||||| || |||||||||||||| ||||| || || ||||| |||||||||| |
|
|
| T |
42162696 |
attcccacctccttgagcccatcctcagtagcaacacctctaaacatcccattacaattaaatccataagccacttcacccttgctagacacagcaataa |
42162795 |
T |
|
| Q |
342 |
g |
342 |
Q |
| |
|
| |
|
|
| T |
42162796 |
g |
42162796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 47171555 - 47171442
Alignment:
| Q |
236 |
tcccaaattccaacctccatgaatccatcctcagaagcacaacccctaaacatgccattgcagttaaatccataagcaacttctcctttactagaaacag |
335 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||||| |||||| ||||||||||| ||||| || || || |||||||| ||||| || || | || |||| |
|
|
| T |
47171555 |
tcccaaattcccacctccatgaacccattctcagtagcacagcccctaaacattccattacaattgaacccataagccacttcacccttgttggacacag |
47171456 |
T |
|
| Q |
336 |
caataagtccagca |
349 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
47171455 |
caataagaccagca |
47171442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University