View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4677-Insertion-3 (Length: 271)
Name: NF4677-Insertion-3
Description: NF4677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4677-Insertion-3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 14992444 - 14992689
Alignment:
| Q |
8 |
cacaactcaaatggtggttgtgtcatcatcattgcatcaatgttagcatcataatttcaaattgaatctttcttttctctgtgtccttgtcttctatata |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14992444 |
cacaactcaaatggtgtttgtgtcatcatcattgtatcaatgttagcatcttaatttcaaattgaatctttcttttctctgtgtccttgtcttctatct- |
14992542 |
T |
|
| Q |
108 |
tcccatagaaatctcacattcatcactacaaatattatctagtgaatggacttatgtattgaactttattatatctaaaataacaaccaagtagaccgtg |
207 |
Q |
| |
|
||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14992543 |
---catggaaatctcacattcatcacaacaaaaatgatctagtgaatggacttatgtattgaactttattatatctaaaataacaaccaagtagaccgtg |
14992639 |
T |
|
| Q |
208 |
taatcaacatatctttccgttcaaagaaactattagtacattttcttttg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14992640 |
taatcaacatatctttccgttcaaagaaactattagtacattttcttttg |
14992689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 14990115 - 14990024
Alignment:
| Q |
14 |
tcaaatggtggttgt--gtcatcatcattgcatcaatgtt-agcatcataatttcaaattgaatctttcttttctctgtgtccttgtcttctat |
104 |
Q |
| |
|
|||||||||| |||| ||||||||||||| || ||||| | |||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
14990115 |
tcaaatggtgtttgtatgtcatcatcattgtattgatgtttaacatcataatttcaaattgaatcattcttt--cctgtgtccttgtcttctat |
14990024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University