View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4677_high_1 (Length: 440)

Name: NF4677_high_1
Description: NF4677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4677_high_1
NF4677_high_1
[»] chr2 (3 HSPs)
chr2 (130-424)||(32271288-32271582)
chr2 (10-106)||(32271607-32271703)
chr2 (291-365)||(43741463-43741537)
[»] chr8 (2 HSPs)
chr8 (291-365)||(21634809-21634883)
chr8 (295-365)||(5515537-5515607)
[»] chr7 (9 HSPs)
chr7 (291-365)||(32089268-32089342)
chr7 (291-365)||(32096741-32096815)
chr7 (291-365)||(39128495-39128569)
chr7 (291-365)||(39478476-39478550)
chr7 (291-365)||(41706632-41706706)
chr7 (291-365)||(41812180-41812254)
chr7 (291-365)||(32087913-32087987)
chr7 (291-365)||(32093025-32093099)
chr7 (326-364)||(32089075-32089113)
[»] chr6 (4 HSPs)
chr6 (291-365)||(26217237-26217311)
chr6 (291-345)||(6845989-6846043)
chr6 (291-351)||(7618947-7619007)
chr6 (293-331)||(11187926-11187964)
[»] chr3 (5 HSPs)
chr3 (291-365)||(38044524-38044598)
chr3 (291-365)||(48838006-48838080)
chr3 (291-365)||(50152373-50152447)
chr3 (291-364)||(50904005-50904078)
chr3 (291-365)||(50916157-50916235)
[»] chr1 (3 HSPs)
chr1 (291-365)||(31141951-31142025)
chr1 (316-365)||(27402438-27402487)
chr1 (291-362)||(30272481-30272551)
[»] scaffold0856 (1 HSPs)
scaffold0856 (291-362)||(4895-4966)
[»] chr4 (4 HSPs)
chr4 (315-364)||(8762982-8763031)
chr4 (291-364)||(7777910-7777984)
chr4 (291-364)||(7772302-7772376)
chr4 (291-364)||(7792702-7792776)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 130 - 424
Target Start/End: Complemental strand, 32271582 - 32271288
Alignment:
Q  130 gaggccataataatatgtacattgaatttgctttattgaccgtttgttatacgtttgtcatgcgttcatccaccattatatctaaacactttataattct 229  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32271582 gaggccataataatatctacattgaatttgctttattgaccgtttgttatacgtttgtcatgcgttcatccaccattatatctaaacactttataattct 32271483  T
Q  230 ctgtacatattcaacatcttattttctctttatctttctcttcctaccacataacttatctataaaattggaacgatacaaagaagattatcatggcccc 329  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32271482 atgtacatattcaacatcttattttctctttatctttctcttcctaccacataacttatctataaaattggaacgatacaaagaagattatcatggcccc 32271383  T
Q  330 tgcgcaaggatgacacgcacaaatcgagaaatggtcnnnnnnntattctctaccgaggacatctcttgttcggcaggatgtggccaggttgaaag 424  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32271382 tgcgcaaggatgacacgcacaaatcgagaaatggtcaaaaaaatattctctaccgaggacatctcttgttcggcaggatgtggccaggttgaaag 32271288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 32271703 - 32271607
Alignment:
Q  10 tatactccattctcattataaatataagnnnnnnntgttaaacaaaattgatatatttggttaaattttttaatggaatacagtaactttgttcaac 106  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32271703 tatactccattctcattataaatataagaaaaaaatgttaaacaaaattgatatatttggttaaattttttaatggaatacaataactttgttcaac 32271607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 43741463 - 43741537
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||  ||| ||||| ||||||||| |||||| ||||| |||||||||||||||| |||||||||||||||    
T  43741463 ataaaattaaaacaatacatagaagattaacatggctcctgcacaaggatgacacgcaccaatcgagaaatggtc 43741537  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 21634883 - 21634809
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21634883 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 21634809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 5515537 - 5515607
Alignment:
Q  295 aattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||    
T  5515537 aattggaacgatacagagaagattagcatggcccttgcgcaaagatgacacgcacaaatcgagaaatggtc 5515607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 32089342 - 32089268
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32089342 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 32089268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 32096815 - 32096741
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32096815 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 32096741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 39128569 - 39128495
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39128569 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 39128495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 39478476 - 39478550
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39478476 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 39478550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 41706706 - 41706632
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41706706 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 41706632  T

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Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 41812180 - 41812254
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41812180 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 41812254  T

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Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 32087987 - 32087913
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  32087987 ataaaattggaacgatacagagaagattaacatggcccctgcacaaggatgacacgcacaaatcgagaaatggtc 32087913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 32093099 - 32093025
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  32093099 ataaaattggaacgatacagagaagattagcatggcccctgtgcaaggatgacacgcacaaatcgagaaatggtc 32093025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 364
Target Start/End: Original strand, 32089075 - 32089113
Alignment:
Q  326 cccctgcgcaaggatgacacgcacaaatcgagaaatggt 364  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32089075 cccctgcgcaaggatgacacgcacaaatcgagaaatggt 32089113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 26217311 - 26217237
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26217311 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 26217237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 6845989 - 6846043
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacac 345  Q
    ||||||||||||||||| ||||||||||| || | ||||||||||||||| ||||    
T  6845989 ataaaattggaacgatataaagaagattaacaggacccctgcgcaaggatcacac 6846043  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 7619007 - 7618947
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaa 351  Q
    |||||||||||| |||||| ||||||||| ||||  || ||||||| ||||||||||||||    
T  7619007 ataaaattggaatgatacagagaagattagcatgatccatgcgcaaagatgacacgcacaa 7618947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 11187926 - 11187964
Alignment:
Q  293 aaaattggaacgatacaaagaagattatcatggcccctg 331  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  11187926 aaaattggaacgatacagagaagattagcatggcccctg 11187964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 38044598 - 38044524
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38044598 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 38044524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 48838006 - 48838080
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48838006 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 48838080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 50152373 - 50152447
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50152373 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 50152447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 50904005 - 50904078
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggt 364  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||||    
T  50904005 ataaaattggaacgatacagagaagattagcaaggcccctgcgcaaggatgacacgcacaattcgagaaatggt 50904078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 50916235 - 50916157
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatc----atggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||| | ||||||||  |    ||||||| ||| |||||||||||||||||||| |||||||||||    
T  50916235 ataaaattggaacgatatagagaagattggcatggatggcccttgcacaaggatgacacgcacaaattgagaaatggtc 50916157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 31142025 - 31141951
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31142025 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 31141951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 27402487 - 27402438
Alignment:
Q  316 attatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 365  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  27402487 attagcatggcccctgcacaaggatgacacgcacaaatcgagaaatggtc 27402438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 30272481 - 30272551
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatg 362  Q
    |||||||||||| |||||| ||||||||| ||||| || |||||||  ||||||||||||||||||||||||    
T  30272481 ataaaattggaatgatacagagaagattagcatgg-ccatgcgcaacaatgacacgcacaaatcgagaaatg 30272551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 4966 - 4895
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatg 362  Q
    |||||||||||| |||||| ||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  4966 ataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatg 4895  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 364
Target Start/End: Original strand, 8762982 - 8763031
Alignment:
Q  315 gattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggt 364  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8762982 gattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggt 8763031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 7777984 - 7777910
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggc-ccctgcgcaaggatgacacgcacaaatcgagaaatggt 364  Q
    ||||||||||||||||||| ||||||||| |||||| ||| ||| ||||||| || ||| |||||||||||||||    
T  7777984 ataaaattggaacgatacagagaagattagcatggcacccggcgtaaggatggcaagcataaatcgagaaatggt 7777910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 7772376 - 7772302
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggc-ccctgcgcaaggatgacacgcacaaatcgagaaatggt 364  Q
    ||||||||||||||||||| ||||||||| |||||| ||| ||| ||||||| || ||| | |||| ||||||||    
T  7772376 ataaaattggaacgatacagagaagattagcatggcacccggcgtaaggatggcaagcatacatcgtgaaatggt 7772302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 7792776 - 7792702
Alignment:
Q  291 ataaaattggaacgatacaaagaagattatcatggc-ccctgcgcaaggatgacacgcacaaatcgagaaatggt 364  Q
    ||||||||||||||||| | ||||||||| |||||| |||  || ||||||| || ||| |||||||||||||||    
T  7792776 ataaaattggaacgatatagagaagattagcatggcacccgacgtaaggatggcaagcataaatcgagaaatggt 7792702  T

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