View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4677_high_4 (Length: 263)
Name: NF4677_high_4
Description: NF4677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4677_high_4 |
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| [»] scaffold0651 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 2287 - 2025
Alignment:
| Q |
1 |
tcatcattttcagcactatatccatgggaatcaggactagactacaaacaaagaatgctaaattatccaagaactgcacatttcataacaataataagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2287 |
tcatcattttcagcactatatccatgggaatcaggactggactacaaacaaagaatgctaaattatccaagaacagcacatttcataacaataataagag |
2188 |
T |
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| Q |
101 |
acaaagctggtggacaagtaacaacagagggaagaatcagctacaaattgaattcaatcgacaaagagaatatgagagctggtatacaacaagcactaag |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2187 |
acaaagctggtggacaagtaacaacagagcgaagaatcagctacaaattgaattcaatcgacaaagagaatatgagagccggtatacaacaagcactaag |
2088 |
T |
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| Q |
201 |
aattttaatagcagcaggagcagttgaagtaggaacacacagaagtggtggtcagagaattaa |
263 |
Q |
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| T |
2087 |
aattttaatagcagcaggagcagttgaagtaggaacacacagaagtggtggtcagagaattaa |
2025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 31333637 - 31333899
Alignment:
| Q |
1 |
tcatcattttcagcactatatccatgggaatcaggactagactacaaacaaagaatgctaaattatccaagaactgcacatttcataacaataataagag |
100 |
Q |
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| T |
31333637 |
tcatcattttcagcactatatccatgggaatcaggactggactacaaacaaagaatgctaaattatccaagaacagcacatttcataacaataataagag |
31333736 |
T |
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| Q |
101 |
acaaagctggtggacaagtaacaacagagggaagaatcagctacaaattgaattcaatcgacaaagagaatatgagagctggtatacaacaagcactaag |
200 |
Q |
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| T |
31333737 |
acaaagctggtggacaagtaacaacagagcgaagaatcagctacaaattgaattcaatcgacaaagagaatatgagagccggtatacaacaagcactaag |
31333836 |
T |
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| Q |
201 |
aattttaatagcagcaggagcagttgaagtaggaacacacagaagtggtggtcagagaattaa |
263 |
Q |
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| T |
31333837 |
aattttaatagcagcaggagcagttgaagtaggaacacacagaagtggtggtcagagaattaa |
31333899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 31321384 - 31321646
Alignment:
| Q |
1 |
tcatcattttcagcactatatccatgggaatcaggactagactacaaacaaagaatgctaaattatccaagaactgcacatttcataacaataataagag |
100 |
Q |
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||||||||| || || |||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| || || ||||||||||||| |
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| T |
31321384 |
tcatcatttgcatcaatatatccatgggaatcaggacttgacttcaaacaaagaatgctaaaatatccaagaacagcacacttaatcacaataataagag |
31321483 |
T |
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| Q |
101 |
acaaagctggtggacaagtaacaacagagggaagaatcagctacaaattgaattcaatcgacaaagagaatatgagagctggtatacaacaagcactaag |
200 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| |||||| |
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| T |
31321484 |
acaaagcaagtggacaagtaaaaacagagggaagaatcagctacaaattgaattcaattgacagagagaatatgagagctggtttacaacaaggactaag |
31321583 |
T |
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| Q |
201 |
aattttaatagcagcaggagcagttgaagtaggaacacacagaagtggtggtcagagaattaa |
263 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31321584 |
aattctaatagcagcaggagcagttgaagtaggaacacacagaagtgatggtcagagaattaa |
31321646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 22513672 - 22513564
Alignment:
| Q |
140 |
gctacaaattgaattcaatcgacaaag-agaatatgagagctggtatacaacaagcactaagaattttaatagcagcaggagcagttgaagtaggaacac |
238 |
Q |
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||||||||||||||||||| || | | | ||||||||||||||| ||||||||||| | || ||| | |||||||||||| |||||||||||| ||||| |
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| T |
22513672 |
gctacaaattgaattcaattgatagggaaaaatatgagagctggtttacaacaagcaatgaggattctgatagcagcaggaacagttgaagtagaaacac |
22513573 |
T |
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| Q |
239 |
acagaagtg |
247 |
Q |
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| T |
22513572 |
gcagaagtg |
22513564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 33521372 - 33521319
Alignment:
| Q |
208 |
atagcagcaggagcagttgaagtaggaacacacagaagtggtggtcagagaatt |
261 |
Q |
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| T |
33521372 |
atagcagctggagcagttgaggtaggtactcacagaagtgatggacagagaatt |
33521319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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