View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4677_high_8 (Length: 236)

Name: NF4677_high_8
Description: NF4677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4677_high_8
NF4677_high_8
[»] chr2 (6 HSPs)
chr2 (1-77)||(40058960-40059036)
chr2 (1-77)||(40076974-40077050)
chr2 (1-77)||(40084898-40084974)
chr2 (168-222)||(40077137-40077191)
chr2 (168-222)||(40059109-40059163)
chr2 (168-222)||(40085047-40085101)
[»] chr4 (1 HSPs)
chr4 (1-77)||(22016599-22016675)
[»] chr7 (1 HSPs)
chr7 (168-219)||(35052919-35052970)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40058960 - 40059036
Alignment:
Q  1 tagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacagg 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058960 tagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacagg 40059036  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40076974 - 40077050
Alignment:
Q  1 tagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacagg 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40076974 tagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacagg 40077050  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40084898 - 40084974
Alignment:
Q  1 tagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacagg 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084898 tagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacagg 40084974  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 40077137 - 40077191
Alignment:
Q  168 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattga 222  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  40077137 agatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattga 40077191  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 40059109 - 40059163
Alignment:
Q  168 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattga 222  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||    
T  40059109 agatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattga 40059163  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 40085047 - 40085101
Alignment:
Q  168 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattga 222  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||    
T  40085047 agatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattga 40085101  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 22016675 - 22016599
Alignment:
Q  1 tagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacagg 77  Q
    ||||||||||||||||||||||||||| || ||  | || |||||||| ||||| || |||||||| ||||| ||||    
T  22016675 tagagcattggtcattgatggtaaacgcagggttcttatgtctggttccattcattatcctcgtagcactcctcagg 22016599  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 35052970 - 35052919
Alignment:
Q  168 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcat 219  Q
    ||||||||||| ||||||||||||||| || ||||||||||||  |||||||    
T  35052970 agatgtggccaaaccttattcaaaaatttatagatggaggactttatgtcat 35052919  T

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