View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4678-Insertion-2 (Length: 198)
Name: NF4678-Insertion-2
Description: NF4678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4678-Insertion-2 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold0312 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 440468 - 440673
Alignment:
| Q |
8 |
gcagagatgtagtgattgtaggaaattttgaccgcgaaaattagactgctatagaaaactatttgacaaaactttatactaaatggcatacagta----- |
102 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
440468 |
gcagagatgcagtgattgtaggaaattttgaccgcgaaaattagactgctatagaaaactatttgacaaaactttatactaaatggcatacagtagaata |
440567 |
T |
|
| Q |
103 |
----------gactgcacaaaatccggattcattcataagcaataccttacgaaaaggaattaatgctgtcagcccaacaaagtaagaaacaaagagaaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
440568 |
atagtaatttgactgcacaaaatccggattcattcataagcaataccttacgaaaaggaattaaagctgtcagcccaacaaagtaagaaacaaagagaaa |
440667 |
T |
|
| Q |
193 |
accagt |
198 |
Q |
| |
|
|||||| |
|
|
| T |
440668 |
accagt |
440673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 410027 - 410118
Alignment:
| Q |
107 |
gcacaaaatccggattcattcataagcaataccttacgaaaaggaattaatgctgtcagcccaacaaagtaagaaacaaagagaaaaccagt |
198 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| | ||| || |||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
410027 |
gcacaaaatccagattcattcataaccaatacctttctaaagggtattaatgctgtcagcccaacaaagtaagtaacaaagagaaagccagt |
410118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 402955 - 403044
Alignment:
| Q |
103 |
gactgcacaaaatccggattcattcataagcaataccttacgaaaaggaattaatgctgtcagcccaacaaagtaagaaacaaagagaaa |
192 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
402955 |
gactgcacaaaatcaagaatcattcataagcaatacctttctaaagggaattaatgctgttagcccaacaaagtaagtaacaaagagaaa |
403044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 428021 - 428081
Alignment:
| Q |
132 |
gcaataccttacgaaaaggaattaatgctgtcagcccaacaaagtaagaaacaaagagaaa |
192 |
Q |
| |
|
|||||||||| | ||| |||||||||||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
428021 |
gcaatacctttctaaagggaattaatgctgttagcccaacaaagtaagtaacaaatagaaa |
428081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 60; Significance: 8e-26; HSPs: 2)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 20543 - 20452
Alignment:
| Q |
107 |
gcacaaaatccggattcattcataagcaataccttacgaaaaggaattaatgctgtcagcccaacaaagtaagaaacaaagagaaaaccagt |
198 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| | ||| || |||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
20543 |
gcacaaaatccagattcattcataaccaatacctttctaaagggtattaatgctgtcagcccaacaaagtaagtaacaaagagaaagccagt |
20452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 2529 - 2469
Alignment:
| Q |
132 |
gcaataccttacgaaaaggaattaatgctgtcagcccaacaaagtaagaaacaaagagaaa |
192 |
Q |
| |
|
|||||||||| | ||| |||||||||||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
2529 |
gcaatacctttctaaagggaattaatgctgttagcccaacaaagtaagtaacaaatagaaa |
2469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University