View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4678_high_4 (Length: 213)
Name: NF4678_high_4
Description: NF4678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4678_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 28013975 - 28013790
Alignment:
| Q |
12 |
cagagatgagaattaccatagaagaggagagtttttccaactagttggcctaagatcctgactcctgagaataagaaaaaataaacaaaagagaactatt |
111 |
Q |
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| T |
28013975 |
cagagatgagaattaccatagaagaggagagtttttccaattagttggcctaagatcctgactcctgagaataagaaaaaataaacaaaagagaactatt |
28013876 |
T |
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| Q |
112 |
aatgattgtagattatattagaaatggttcagaaagaacaaagtggacaagaatgaaacagggaaaagaagcttaccagcacttgt |
197 |
Q |
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| T |
28013875 |
aatgattgtagattatattagaaatggttcagaaagaacaaattggaaaagaatgaaacgtggaaaagaagcttaccagcacttgt |
28013790 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 54960855 - 54960889
Alignment:
| Q |
18 |
tgagaattaccatagaagaggagagtttttccaac |
52 |
Q |
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| T |
54960855 |
tgagaattaccatagaagaggagagtttttccaac |
54960889 |
T |
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