View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4678_high_6 (Length: 207)
Name: NF4678_high_6
Description: NF4678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4678_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 35025321 - 35025498
Alignment:
| Q |
19 |
aggaggccgaccattaaagatgttattggcttt-ataataagaacttgtttaagctaaggagtgataaggtgcaatattgtgatggacttgtaattaaac |
117 |
Q |
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| T |
35025321 |
aggaggccgaccattaaagatgttattggcttttataataagaacttgtttaagctaatgagtgataagatgcaatattgtgatggacttgtaattaaac |
35025420 |
T |
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| Q |
118 |
taatgggaaatggtaagattcggtcttaaaaatttgtcagcgtagcgaatctagttgttctgaaaataacctatgctt |
195 |
Q |
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| T |
35025421 |
taatgggaaatggtaagattcggtcttaaaaatttgccagcgtagcgaatctagttgttctgaaaataacctatgctt |
35025498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 37851692 - 37851860
Alignment:
| Q |
28 |
accattaaagatgttattggcttt-ataataagaacttgtttaagctaaggagtgataaggtgcaatattgtgatggacttgtaattaaactaatgggaa |
126 |
Q |
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| T |
37851692 |
accatgaaagttgttataggcttttataataagaacctgtttaagatgaggtatgatgaggtgcaatatggtgatggacttgtagtggaactgatgggaa |
37851791 |
T |
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| Q |
127 |
atggtaagattcggtcttaaaaatttgtcagcgtagcgaatctagttgttctgaaaataacctatgctt |
195 |
Q |
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| T |
37851792 |
atggtaagattcagtataaaaaagtttttggcatagcgaatctagttgttccaaaaataacctatgctt |
37851860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 37832834 - 37832976
Alignment:
| Q |
22 |
aggccgaccattaaagatgttattggctttat-aataagaacttgtttaagctaaggagtgataaggtgcaatattgtgatggacttgtaattaaactaa |
120 |
Q |
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| T |
37832834 |
aggccgaccatgaaaggtgttattcgtttttttaataacaacttgtttaagctgaggtgtgatgaggttcaatatggcgatggacttacaattaaactga |
37832933 |
T |
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| Q |
121 |
tgggaaatggtaagattcggtcttaaaaatttgtcagcgtagc |
163 |
Q |
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| T |
37832934 |
tgggaaacggtaagattgagtctgtaaaattggtcagggtagc |
37832976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 37838354 - 37838531
Alignment:
| Q |
19 |
aggaggccgaccattaaagatgttattggcttt-ataataagaacttgtttaagctaaggagtgataaggtgcaatattgtgatggacttgtaattaaac |
117 |
Q |
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|||||||||||||| ||||||||||||| |||| ||||||| || |||||||||||||| ||||| | || |||||| || |||||| |||||||| |
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| T |
37838354 |
aggaggccgaccatgaaagatgttattgacttttataataactacctgtttaagctaaggtgtgatgaagttcaatatggtataggactttcaattaaac |
37838453 |
T |
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| Q |
118 |
taatgggaaatggtaagattcggtcttaaaaatttgtcagcgtagcgaatctagttgttctgaaaataacctatgctt |
195 |
Q |
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| T |
37838454 |
tgatgggaaatggtaaattgctggctcaaaaggttgttggcgtattgaatctagttcttccaaaaataacctatgctt |
37838531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 36867035 - 36867209
Alignment:
| Q |
19 |
aggaggccgaccattaaagatgttattggcttt-ataataagaacttgtttaagctaaggagtgataaggtgcaatattgtgatggacttgtaattaaac |
117 |
Q |
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|||||||| ||||| ||||||||||||| |||| |||||| ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
36867035 |
aggaggccaaccatgaaagatgttattgccttttataatacgaacttgtttaagctgaggtgtgataaggtgaaatattgtgatggacttgtaattaaac |
36867134 |
T |
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| Q |
118 |
taatgggaaatggtaagattcggtcttaaaaatttgtcagcgtagcgaatctagttgttctgaaaataacctatg |
192 |
Q |
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|||||||||||||||||||| |||| ||||||| | |||| |||||||||||| ||||| ||||||| ||||| |
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| T |
36867135 |
taatgggaaatggtaagattttgtctgaaaaattcgccagcatagcgaatctagctgttccaaaaataaactatg |
36867209 |
T |
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