View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4678_low_1 (Length: 493)

Name: NF4678_low_1
Description: NF4678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4678_low_1
NF4678_low_1
[»] chr1 (10 HSPs)
chr1 (174-390)||(27877958-27878172)
chr1 (20-84)||(27877802-27877866)
chr1 (20-84)||(10395304-10395368)
chr1 (20-84)||(12539217-12539281)
chr1 (20-84)||(40610028-40610092)
chr1 (22-84)||(3601164-3601226)
chr1 (23-84)||(2114460-2114521)
chr1 (39-84)||(9782430-9782475)
chr1 (20-84)||(17321976-17322040)
chr1 (26-82)||(32544292-32544348)
[»] chr8 (7 HSPs)
chr8 (20-82)||(26951388-26951450)
chr8 (20-80)||(21276375-21276435)
chr8 (33-82)||(18150955-18151004)
chr8 (20-73)||(33324806-33324859)
chr8 (36-84)||(11911332-11911380)
chr8 (38-76)||(34618975-34619013)
chr8 (23-71)||(9808675-9808723)
[»] chr7 (7 HSPs)
chr7 (20-82)||(17852445-17852507)
chr7 (20-82)||(12129592-12129654)
chr7 (20-84)||(9451561-9451625)
chr7 (22-73)||(34881071-34881122)
chr7 (23-73)||(31956950-31957000)
chr7 (22-68)||(36723724-36723770)
chr7 (23-84)||(36677721-36677782)
[»] chr6 (5 HSPs)
chr6 (20-82)||(11657735-11657797)
chr6 (20-84)||(32900004-32900068)
chr6 (20-66)||(27862053-27862099)
chr6 (27-84)||(29021910-29021967)
chr6 (20-76)||(13104324-13104379)
[»] scaffold0010 (1 HSPs)
scaffold0010 (20-82)||(255314-255376)
[»] chr4 (6 HSPs)
chr4 (20-82)||(16889242-16889304)
chr4 (23-81)||(35097012-35097071)
chr4 (20-73)||(37856927-37856980)
chr4 (43-82)||(32881904-32881943)
chr4 (30-73)||(46078569-46078612)
chr4 (20-52)||(23059319-23059351)
[»] chr3 (7 HSPs)
chr3 (20-82)||(1017574-1017636)
chr3 (20-82)||(26730819-26730881)
chr3 (20-82)||(47703683-47703745)
chr3 (24-73)||(4525394-4525443)
chr3 (20-64)||(20223252-20223296)
chr3 (37-82)||(7579623-7579668)
chr3 (23-84)||(10346430-10346491)
[»] chr2 (3 HSPs)
chr2 (20-82)||(41315813-41315875)
chr2 (20-71)||(10977858-10977909)
chr2 (20-79)||(28589903-28589962)
[»] chr5 (5 HSPs)
chr5 (20-80)||(30304922-30304982)
chr5 (20-83)||(24870531-24870594)
chr5 (20-82)||(24275343-24275405)
chr5 (20-82)||(24386808-24386870)
chr5 (21-73)||(10032435-10032487)
[»] scaffold0151 (1 HSPs)
scaffold0151 (20-73)||(21308-21361)
[»] scaffold0445 (1 HSPs)
scaffold0445 (37-82)||(12650-12695)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 174 - 390
Target Start/End: Original strand, 27877958 - 27878172
Alignment:
Q  174 cgctcctatacatatttaaaaaatagttgagagaaggtgttgtatgtactacgaatttgtttgatgttgttaagaacacgagagaatatatcatactatt 273  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||    
T  27877958 cgctcctatacatatttgaaaaatagttgagagaaggtgttgtatgtactatgaatttgtttgatgttgttaagaacacgagaga--atatcatactatt 27878055  T
Q  274 agacacaactttaaaatatacatagtgtccaatactaaaattacaaggnnnnnnnnaaggtgtaaatttacaagggctgtcaaggatgactaccaaaaaa 373  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||    
T  27878056 agacacaactttaaaatatacatagtgtacaatactaaaattacaaggttttttttaaggtgtaaatttacaagggctgtcaaggatgactaccacaaaa 27878155  T
Q  374 ctatgtgccatttcact 390  Q
    |||||||||||||||||    
T  27878156 ctatgtgccatttcact 27878172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 27877802 - 27877866
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27877802 attgatgatgtacctacatgtatttgacatattttagctaatgaaatgcaatgatttccttcctt 27877866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 10395368 - 10395304
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  10395368 attgatgatgtacctacatgtatttggcatattttagttaatgaaatacaatgattttcttcctt 10395304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 12539217 - 12539281
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || |||||||    
T  12539217 attgatgatgtacctacatttatttgacatattttagctaatgaaatgcaatgaatttcttcctt 12539281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 40610028 - 40610092
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  40610028 attgatgatgtacatacatgtatttgacatattttagctaatgaaatgtaatgattttcttcctt 40610092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 3601226 - 3601164
Alignment:
Q  22 tgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||||||| || |||||||    
T  3601226 tgatgatgtaccttcatgtatttgacatattttagctaatggaatgcaatgaatttcttcctt 3601164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 2114460 - 2114521
Alignment:
Q  23 gatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    |||||| |||||  |||||||||||| |||||| ||||||||||||||||| || |||||||    
T  2114460 gatgatctacctttatgtatttggcacattttaactaatgaaatgcaatgaatttcttcctt 2114521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 9782475 - 9782430
Alignment:
Q  39 gtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||||    
T  9782475 gtatttggcatattttagctaatgaaatccaacgatttgcttcctt 9782430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 17321976 - 17322040
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    ||||||||||||||  ||||||| || || ||||||||||||||| |||||||| || |||||||    
T  17321976 attgatgatgtaccctcatgtatgtgacacattttagctaatgaattgcaatgaatttcttcctt 17322040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 32544348 - 32544292
Alignment:
Q  26 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    |||||||||  |||||||||||| |||||| ||||||||||||||||| || |||||    
T  32544348 gatgtaccttaatgtatttggcacattttaactaatgaaatgcaatgaatttcttcc 32544292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 26951450 - 26951388
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26951450 attgatgatatacctacatgtatttggcatattttatctaatgaaatgcaatgatttccttcc 26951388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 21276435 - 21276375
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttcctt 80  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21276435 attgatgatgtatctacacgtatttggcatattttagctaatgaaatgcaatgatttcctt 21276375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 18151004 - 18150955
Alignment:
Q  33 ctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  18151004 ctacatgtatttagcatattttatctaatgaaatgcaatgatttccttcc 18150955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 33324806 - 33324859
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 73  Q
    |||||||||||||||| ||||||||| |||||||||| |||| |||||||||||    
T  33324806 attgatgatgtacctatatgtatttgacatattttagttaataaaatgcaatga 33324859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 11911380 - 11911332
Alignment:
Q  36 catgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    ||||||||||| | |||||||||||||||||||||||| || |||||||    
T  11911380 catgtatttggtacattttagctaatgaaatgcaatgaatttcttcctt 11911332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 34619013 - 34618975
Alignment:
Q  38 tgtatttggcatattttagctaatgaaatgcaatgattt 76  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  34619013 tgtatttgacatattttagttaatgaaatgcaatgattt 34618975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 9808723 - 9808675
Alignment:
Q  23 gatgatgtacctacatgtatttggcatattttagctaatgaaatgcaat 71  Q
    |||||||| ||| |||||||||| || | ||||||||||||||||||||    
T  9808723 gatgatgttccttcatgtatttgtcacactttagctaatgaaatgcaat 9808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 17852445 - 17852507
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  17852445 attgatgatgtacctacatgtatttggcatattttatctaatgaaatgcaatgattttcttcc 17852507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 12129592 - 12129654
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||    
T  12129592 attgatgatgtacctacatgtatttgacatattttatctaatgaaatgcaatgattttcttcc 12129654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 9451561 - 9451625
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||| | || |||||||    
T  9451561 attgatgatgtacctacatgtatttgacatattttacctaatgaaatgcaattaatttcttcctt 9451625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 34881071 - 34881122
Alignment:
Q  22 tgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 73  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  34881071 tgatgatgtatctacatgtatttggcatatttttgctaatgaaatgcaatga 34881122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 31957000 - 31956950
Alignment:
Q  23 gatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 73  Q
    ||||||| |||  ||||||||||||| |||||| |||||||||||||||||    
T  31957000 gatgatgcaccctcatgtatttggcacattttaactaatgaaatgcaatga 31956950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 36723770 - 36723724
Alignment:
Q  22 tgatgatgtacctacatgtatttggcatattttagctaatgaaatgc 68  Q
    ||||||| ||||| | ||||||||||||||||| |||||||||||||    
T  36723770 tgatgatataccttcgtgtatttggcatatttttgctaatgaaatgc 36723724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 36677721 - 36677782
Alignment:
Q  23 gatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    |||||||| ||  |||||||||| || |||||||||||||||||||||| | || |||||||    
T  36677721 gatgatgttccctcatgtatttgacacattttagctaatgaaatgcaataaatttcttcctt 36677782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 11657735 - 11657797
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  11657735 attgatgatgtacctacatatatttggcatattttagctaatgaaatgcaatgattttcttcc 11657797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 32900004 - 32900068
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    |||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32900004 attgatgatgcacctatatgtatttgacatattttagctaatgaaatgcaatgatttccttcctt 32900068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 27862099 - 27862053
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaat 66  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  27862099 attgatgatgtacctacatgtatttgacatattttagctaatgaaat 27862053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 29021910 - 29021967
Alignment:
Q  27 atgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    |||||||||||| |||||| ||||||||||||||| ||||||||||| || |||||||    
T  29021910 atgtacctacatatatttgacatattttagctaattaaatgcaatgaatttcttcctt 29021967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 13104379 - 13104324
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgattt 76  Q
    ||||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  13104379 attgacgatgtacctatatgtatttggcata-tttaactaatgaaatgcaatgattt 13104324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 255376 - 255314
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  255376 attgatgatatacctacatgtatttggcatactttatctaatgaaatgcaatgatttccttcc 255314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 16889242 - 16889304
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||    
T  16889242 attgatgatgtacctacatgtatttggcatattttatctaacgaaatgcaatgattttcttcc 16889304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 35097012 - 35097071
Alignment:
Q  23 gatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatg-atttccttc 81  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  35097012 gatgatgtaccttcatgtatttggcacattttagctaatgaaatgcaatgaatttccttc 35097071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 37856980 - 37856927
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 73  Q
    ||||||||| ||||||||||||||||  |||||||| |||||||||||||||||    
T  37856980 attgatgatatacctacatgtatttgaaatattttacctaatgaaatgcaatga 37856927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 32881904 - 32881943
Alignment:
Q  43 ttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  32881904 ttggcatattttatctaatgaaatgcaatgattttcttcc 32881943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 46078569 - 46078612
Alignment:
Q  30 tacctacatgtatttggcatattttagctaatgaaatgcaatga 73  Q
    ||||| |||||||||| || ||||||||||||||||||||||||    
T  46078569 taccttcatgtatttgacacattttagctaatgaaatgcaatga 46078612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 23059351 - 23059319
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatatt 52  Q
    |||||||||||| ||||||||||||||||||||    
T  23059351 attgatgatgtatctacatgtatttggcatatt 23059319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 1017636 - 1017574
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  1017636 attgatgatgtacctacatgtatttggcatattttatctaatgaaatgcaataattttcttcc 1017574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 26730881 - 26730819
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  26730881 attgatgatatacctacatgtatttggcatattttatctaatgaaatgcaatgattttcttcc 26730819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 47703745 - 47703683
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||||||    
T  47703745 attgatgatatacctacatgtatttggcatattttatctaatgaaatgcactgttttccttcc 47703683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 4525443 - 4525394
Alignment:
Q  24 atgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 73  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4525443 atgatgtacgtacatgtatttggcatattttagctaatgaaatgcaatga 4525394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 20223252 - 20223296
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaa 64  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  20223252 attgatgatgtacctacatgtatttggcatattttagttaatgaa 20223296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 7579623 - 7579668
Alignment:
Q  37 atgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||    
T  7579623 atgtatttggcatattttatctaatgaaatgcaatgattttcttcc 7579668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 10346491 - 10346430
Alignment:
Q  23 gatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 84  Q
    |||||||||||  |||||||||| || |||||||||||||||||||||||| || |||||||    
T  10346491 gatgatgtaccctcatgtatttgacacattttagctaatgaaatgcaatgaatttcttcctt 10346430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 41315875 - 41315813
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  41315875 attgatgatatacctacatatatttggcatattttatctaatgaaatgcaatgatttccttcc 41315813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 10977858 - 10977909
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaat 71  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  10977858 attgatgatatacctacatgtatttgacatattttagctaatgaaatacaat 10977909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 28589962 - 28589903
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttcct 79  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||||||| | |||||||    
T  28589962 attgatgatatacctaaatgtatttggcatattttatctaatgaaatgcacttatttcct 28589903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 30304922 - 30304982
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttcctt 80  Q
    ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  30304922 attgatgatatacctacatgtatttggcatattttatctaatgaagtgcaatgatttcctt 30304982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 24870531 - 24870594
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcct 83  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||    
T  24870531 attgatgatgtacctacatatatttgatatattttagctaatgaaatgcaatgattttcttcct 24870594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 24275343 - 24275405
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  24275343 attgatgatgtacttacatgtatttggcatattttaactaatgaaatacaatgattttcttcc 24275405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 24386870 - 24386808
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  24386870 attgatgatgtacttacatgtatttggcatattttaactaatgaaatacaatgattttcttcc 24386808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 10032435 - 10032487
Alignment:
Q  21 ttgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 73  Q
    ||||||||||||||  ||||| ||| |||||||||| |||||||||| |||||    
T  10032435 ttgatgatgtacctttatgtagttgacatattttagttaatgaaatgtaatga 10032487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 21361 - 21308
Alignment:
Q  20 attgatgatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 73  Q
    |||||||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  21361 attgatgatgtacccacatgtatttgacacattttagctaatgaaatgcaatga 21308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 12650 - 12695
Alignment:
Q  37 atgtatttggcatattttagctaatgaaatgcaatgatttccttcc 82  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||    
T  12650 atgtatttggcatattttatctaatgaaatgcaatgattttcttcc 12695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University