View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4678_low_2 (Length: 455)

Name: NF4678_low_2
Description: NF4678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4678_low_2
NF4678_low_2
[»] chr2 (1 HSPs)
chr2 (252-438)||(16149397-16149583)
[»] chr1 (2 HSPs)
chr1 (252-439)||(23302475-23302664)
chr1 (192-250)||(23304311-23304369)
[»] chr6 (1 HSPs)
chr6 (254-438)||(4652006-4652185)
[»] chr5 (3 HSPs)
chr5 (80-163)||(6768721-6768805)
chr5 (200-243)||(19081902-19081945)
chr5 (192-245)||(19083909-19083962)
[»] chr4 (2 HSPs)
chr4 (192-245)||(36757044-36757097)
chr4 (200-245)||(36759066-36759111)
[»] chr3 (4 HSPs)
chr3 (192-245)||(40108184-40108237)
chr3 (192-250)||(1094567-1094625)
chr3 (192-250)||(1094680-1094738)
chr3 (192-245)||(40110210-40110263)
[»] chr7 (1 HSPs)
chr7 (203-250)||(17003328-17003375)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 252 - 438
Target Start/End: Original strand, 16149397 - 16149583
Alignment:
Q  252 taaatttagcagtaatgtgccttatacaaaaagcatgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgat 351  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16149397 taaatttagcagtaatgtgccatatacaaaaagcatgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgat 16149496  T
Q  352 tgtctttggaggcttcttcatgagagtaacaaaagtctgggnnnnnnntaaataataacaatcatatagaaaatacattgggatact 438  Q
    ||||||||||||||||||||||||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||    
T  16149497 tgtctttggaggcttcttcatgagagtaacaaaagtctgtgaaaaaaataaataataacaatcatatagaaaatacattgggatact 16149583  T

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Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 252 - 439
Target Start/End: Complemental strand, 23302664 - 23302475
Alignment:
Q  252 taaatttagcagtaatgtgccttatacaaaaagcatgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgat 351  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23302664 taaatttagcagtaatgtgccatatacaaaaagcatgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgat 23302565  T
Q  352 tgtctttggaggcttcttcatgagagtaacaaaagtctggg--nnnnnnntaaataataacaatcatatagaaaatacattgggatactg 439  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  23302564 tgtctttggaggcttcttcatgagagtaacaaaagtctgggaaaaaaaaataaataataacaatcatatagaaaatacattgggatactg 23302475  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 23304369 - 23304311
Alignment:
Q  192 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatgatccca 250  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||    
T  23304369 ataaggggtatttaatgctccacttttataggtttctacacatcctaataatgacccca 23304311  T

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Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 254 - 438
Target Start/End: Original strand, 4652006 - 4652185
Alignment:
Q  254 aatttagcagtaatgtgccttatacaaaaagcatgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgattg 353  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4652006 aatttagcagtaatgtgccatatacaaaaagcatgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgattg 4652105  T
Q  354 tc-tttggaggcttcttcatgagagtaacaaaagtctgggnnnnnnntaaataataacaatcatatagaaaatacattgggatact 438  Q
     | ||||||||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||| ||||||||||    
T  4652106 gcttttggaggcttcttcatgagagtaacaaaagtctgg------aaaaaaaaataacaatcatatagaaaatacgttgggatact 4652185  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 6768721 - 6768805
Alignment:
Q  80 gtcacaagacacgttt-aaattaagaatttagcaatatcactttgtagataaggatctacaacacaatcaataccactttttata 163  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6768721 gtcacaagacacgtttgaaattaagaatttagcaataccactttgtagataaggatctacaacacaatcaataccactttttata 6768805  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 19081902 - 19081945
Alignment:
Q  200 tatttaatgctccatttttataggtttctacacatcctattaat 243  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  19081902 tatttaatgctccacttttataggtttctacacatcctattaat 19081945  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 19083962 - 19083909
Alignment:
Q  192 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatga 245  Q
    ||||| |||||||||||||| | ||||||||| |||| |||||| |||||||||    
T  19083962 ataaggggtatttaatgctctacttttatagggttctccacatcttattaatga 19083909  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 36757044 - 36757097
Alignment:
Q  192 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatga 245  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  36757044 ataaggggtatttaatgctccacttttataggtttttacacatcctattaatga 36757097  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 36759111 - 36759066
Alignment:
Q  200 tatttaatgctccatttttataggtttctacacatcctattaatga 245  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||    
T  36759111 tatttaatgctccatttttatagggttctccacatcttattaatga 36759066  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 40108184 - 40108237
Alignment:
Q  192 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatga 245  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  40108184 ataaggggtatttaatgctccacttttataggtttttacacatcctattaatga 40108237  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 1094567 - 1094625
Alignment:
Q  192 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatgatccca 250  Q
    ||||| |||||||||||||||| |||||||||||||||| |||| ||||||||| ||||    
T  1094567 ataagtggtatttaatgctccacttttataggtttctacgcatcttattaatgacccca 1094625  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 1094738 - 1094680
Alignment:
Q  192 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatgatccca 250  Q
    ||||| ||||||||||| |||| ||||||||| |||| |||||| ||||||||| ||||    
T  1094738 ataagtggtatttaatgttccacttttatagggttctccacatcttattaatgacccca 1094680  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 40110263 - 40110210
Alignment:
Q  192 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatga 245  Q
    ||||| |||||||||||||||| |||||| || |||| |||||| |||||||||    
T  40110263 ataaggggtatttaatgctccacttttattgggttctccacatcttattaatga 40110210  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 17003328 - 17003375
Alignment:
Q  203 ttaatgctccatttttataggtttctacacatcctattaatgatccca 250  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||| ||||    
T  17003328 ttaatgccccacttttataggtttctacacatcttattaatgacccca 17003375  T

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