View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4678_low_3 (Length: 325)
Name: NF4678_low_3
Description: NF4678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4678_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2839446 - 2839207
Alignment:
| Q |
1 |
agaaagccgaggaggcagaggcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatgnnnnnnnn |
100 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839446 |
agaaagccgaggaggcgaaggcaaaggcaaaggagtaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatgataataat |
2839347 |
T |
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| Q |
101 |
nnnnnnnnntgtattagtatgttctcctttgtgtgcnnnnnnnnnnnnttgagaagattgttatgttatctctctgttctgtgggttgtttttctgtttt |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2839346 |
aataat---tgtattagtatgttctcctttgtgtgcctctctctct--ttgagaagattgttatgttatctctctgttccgtgggttgtttttctgtttt |
2839252 |
T |
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| Q |
201 |
cccaaaatactaccttcataaggatttataactattttgtattca |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839251 |
cccaaaatactaccttcataaggatttataactattttgtattca |
2839207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2373903 - 2374113
Alignment:
| Q |
1 |
agaaagccgaggaggcagaggcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatgnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2373903 |
agaaagccgaggaggcagaggcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg---ataat |
2373999 |
T |
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| Q |
101 |
nnnnnnnnntgtattagtatgttctcctttgtgtgc----nnnnnnnnnnnnttgagaagattgttatgttatctctctgttctgtgggttgtttttctg |
196 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2374000 |
aataataattgtattagtatgttctcctttgtgtgcctctctctctctctctttgagaagattgttatgttatctctctgttctgtgggttgtttttctg |
2374099 |
T |
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| Q |
197 |
ttttcccaaaatac |
210 |
Q |
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|||||||||||||| |
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| T |
2374100 |
ttttcccaaaatac |
2374113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 2382168 - 2381958
Alignment:
| Q |
1 |
agaaagccgaggaggcagaggcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatgnnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2382168 |
agaaagccgaggaggcagaggcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg---ataat |
2382072 |
T |
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| Q |
101 |
nnnnnnnnntgtattagtatgttctcctttgtgtgc----nnnnnnnnnnnnttgagaagattgttatgttatctctctgttctgtgggttgtttttctg |
196 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2382071 |
aataataattgtattagtatgttctcctttgtgtgcctctctctctctctctttgagaagattgttatgttatctctctgttctgtgggttgtttttctg |
2381972 |
T |
|
| Q |
197 |
ttttcccaaaatac |
210 |
Q |
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|||||||||||||| |
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| T |
2381971 |
ttttcccaaaatac |
2381958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 2839178 - 2839142
Alignment:
| Q |
274 |
accatgctttgaatgtttaatatttgtgttcatacct |
310 |
Q |
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| T |
2839178 |
accatgctttgaatgtttaatgtttgtgttcatacct |
2839142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 1525768 - 1525696
Alignment:
| Q |
171 |
tctctgttctgtgggttgtttttctgttttcccaaaatactaccttcataaggatttataactattttgtattca |
245 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1525768 |
tctctgttctctgggttgttt--ctgttttcccaaaatactaccttcataaggatttataactattttggattca |
1525696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 67
Target Start/End: Complemental strand, 1525897 - 1525868
Alignment:
| Q |
38 |
atgaatatttcaagaattagagaaggacta |
67 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1525897 |
atgaatatttcaagaattagagaaggacta |
1525868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 1525688 - 1525652
Alignment:
| Q |
274 |
accatgctttgaatgtttaatatttgtgttcatacct |
310 |
Q |
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||||||||||||||||||||| || |||||||||||| |
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| T |
1525688 |
accatgctttgaatgtttaatgttagtgttcatacct |
1525652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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