View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4679-Insertion-1 (Length: 1015)

Name: NF4679-Insertion-1
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4679-Insertion-1
NF4679-Insertion-1
[»] chr6 (12 HSPs)
chr6 (392-538)||(18299734-18299880)
chr6 (660-759)||(18298103-18298201)
chr6 (68-136)||(3418990-3419058)
chr6 (6-66)||(18299874-18299934)
chr6 (69-136)||(29968710-29968777)
chr6 (687-743)||(18298403-18298460)
chr6 (68-128)||(19292943-19293003)
chr6 (69-142)||(10172510-10172584)
chr6 (62-136)||(19078972-19079045)
chr6 (778-819)||(18298072-18298113)
chr6 (870-934)||(18297979-18298048)
chr6 (95-142)||(26229227-26229273)
[»] chr7 (13 HSPs)
chr7 (67-142)||(44970070-44970145)
chr7 (61-136)||(15234915-15234990)
chr7 (67-136)||(1076072-1076141)
chr7 (68-112)||(11907776-11907820)
chr7 (68-136)||(44945004-44945071)
chr7 (71-136)||(17756574-17756638)
chr7 (68-136)||(21809301-21809368)
chr7 (68-112)||(49017059-49017103)
chr7 (161-270)||(1075938-1076047)
chr7 (67-128)||(4038362-4038423)
chr7 (67-112)||(27400247-27400292)
chr7 (68-136)||(36723894-36723963)
chr7 (229-270)||(43080041-43080082)
[»] chr5 (6 HSPs)
chr5 (61-136)||(17549143-17549218)
chr5 (68-136)||(4428887-4428955)
chr5 (68-136)||(31736902-31736969)
chr5 (94-136)||(37101825-37101867)
chr5 (68-128)||(37022978-37023038)
chr5 (69-136)||(14028303-14028370)
[»] scaffold0001 (1 HSPs)
scaffold0001 (67-136)||(181480-181549)
[»] chr4 (5 HSPs)
chr4 (70-136)||(8823596-8823662)
chr4 (66-142)||(16204738-16204814)
chr4 (71-136)||(45071008-45071071)
chr4 (65-136)||(42841999-42842068)
chr4 (67-112)||(35187645-35187690)
[»] chr2 (3 HSPs)
chr2 (67-136)||(43822902-43822971)
chr2 (73-136)||(13284270-13284333)
chr2 (229-270)||(32164793-32164834)
[»] chr3 (8 HSPs)
chr3 (69-136)||(42641928-42641995)
chr3 (68-136)||(8541097-8541165)
chr3 (68-136)||(47278341-47278408)
chr3 (192-270)||(43410238-43410317)
chr3 (66-136)||(25644575-25644645)
chr3 (99-136)||(47099852-47099889)
chr3 (68-112)||(27813512-27813556)
chr3 (229-270)||(47099984-47100025)
[»] chr1 (7 HSPs)
chr1 (68-142)||(1787322-1787393)
chr1 (66-136)||(4198200-4198269)
chr1 (67-136)||(36565779-36565848)
chr1 (68-125)||(46671531-46671588)
chr1 (68-136)||(25160642-25160709)
chr1 (67-112)||(16632324-16632369)
chr1 (67-112)||(43671450-43671495)
[»] scaffold0648 (1 HSPs)
scaffold0648 (67-136)||(4582-4651)
[»] scaffold0274 (1 HSPs)
scaffold0274 (67-136)||(4052-4121)
[»] chr8 (2 HSPs)
chr8 (72-119)||(19779875-19779921)
chr8 (66-128)||(37044966-37045028)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 4e-53; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 392 - 538
Target Start/End: Complemental strand, 18299880 - 18299734
Alignment:
Q  392 gttggaagcaattacatgtggagtgtcaatggtggcatgacctctttatgcacagcaaagattgaatagggttgtaatggtggaagagatgaaggttgct 491  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||||||||  ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  18299880 gttggaagcaattacttgtggagtgtcaatggtgacatggcctctttatgcggagcaaaggttgaatagggttgtagtggtggaagagatgaaggttgct 18299781  T
Q  492 ttggctttgaaagacaatgaagatgggtttgttaaggcaagtgagtt 538  Q
    |||||||||||||| |||||||||||||||||| | |||||||||||    
T  18299780 ttggctttgaaagagaatgaagatgggtttgttcatgcaagtgagtt 18299734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 660 - 759
Target Start/End: Complemental strand, 18298201 - 18298103
Alignment:
Q  660 tatactttgtatttttcaaaatttgttagtcttcttgaatgcacaaattt-attttattttcggacgaaatgagttacgatgacatattaattcaatgtt 758  Q
    ||||||||||||||  |||||||| | |||||||| |||||||||||||| ||||||||||||||| || ||||||| ||||||| ||| ||||||||||    
T  18298201 tatactttgtattt--caaaatttataagtcttctcgaatgcacaaattttattttattttcggacaaagtgagttatgatgacacattgattcaatgtt 18298104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 3418990 - 3419058
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    ||||||||||||||||  ||||| | ||| ||||||||||||||| |||||||||||||||||||||||    
T  3418990 caggggcggatctctttggagacccccagatgccactgcaccccccagtttttatataaatttcatatt 3419058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 18299934 - 18299874
Alignment:
Q  6 cacaaatgaatgtactgagtcatgactccataggtgcgtttgtgactcattgtggttggaa 66  Q
    ||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  18299934 cacaagtgaaggtactgagtcatgactccaaaggcgcgtttgtgactcattgtggttggaa 18299874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 29968777 - 29968710
Alignment:
Q  69 aggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    ||||||||||||||| |||||| | ||||||||||||||||||| |  |||||||||||| |||||||    
T  29968777 aggggcggatctctttagagacccccaggtgccactgcaccccccaacttttatataaatatcatatt 29968710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 687 - 743
Target Start/End: Complemental strand, 18298460 - 18298403
Alignment:
Q  687 agtcttcttgaatgcacaaatttatttt-attttcggacgaaatgagttacgatgaca 743  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  18298460 agtcttcttgcatgcacaaatttatttttattttcggacgaagtgagttatgatgaca 18298403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 19293003 - 19292943
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaat 128  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| |   |||||||||||    
T  19293003 caggggcggatctcttcagagacccccaggtgccactgcaccccccaacatttatataaat 19292943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 10172510 - 10172584
Alignment:
Q  69 aggggcggatctcttcagagac-tcacaggtgccactgcaccccctagtttttatataaatttcatattgtgcat 142  Q
    ||||||| |||||||||||||| || ||||||||||||||||| | | ||| ||||||||||| ||||| |||||    
T  10172510 aggggcgaatctcttcagagacctcccaggtgccactgcaccctccaatttatatataaattttatattatgcat 10172584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 19079045 - 19078972
Alignment:
Q  62 tggaaccaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||| ||||| |||||||||||||||||| |||| ||| |||||||||||| || ||||| |||||| |||||||    
T  19079045 tggagccaggagcggatctcttcagagacccacaagtggcactgcaccccc-agcttttagataaatatcatatt 19078972  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 778 - 819
Target Start/End: Complemental strand, 18298113 - 18298072
Alignment:
Q  778 attcaatgtttaaaaatgaatttatcatgatgcaagactaac 819  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  18298113 attcaatgtttaaaaatgattttatcatgatgcaagattaac 18298072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 870 - 934
Target Start/End: Complemental strand, 18298048 - 18297979
Alignment:
Q  870 tttttaattttgt-ataacttaagtactag----tgtaattattataaattatatgtatatgtaatgttt 934  Q
    ||||||||||| | ||||||||||||||||    | |||||||||||||||||||||||| |||||||||    
T  18298048 tttttaattttattataacttaagtactagctagtataattattataaattatatgtataggtaatgttt 18297979  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 26229227 - 26229273
Alignment:
Q  95 aggtgccactgcaccccctagtttttatataaatttcatattgtgcat 142  Q
    |||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  26229227 aggtgccactgcaccccc-agtttatatataaatttcatattatgcat 26229273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 5e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 44970070 - 44970145
Alignment:
Q  67 ccaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatattgtgcat 142  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  44970070 ccaggggcggatctcttcagagactcccaggtgccactgcaccccccagtttatatataaatttcatattatgcat 44970145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 15234990 - 15234915
Alignment:
Q  61 ttggaaccaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||| ||||||||||||||||  ||||| | |||||||| |||||||||| |||||||||||||||||||||||    
T  15234990 ttggaatcaggggcggatctctttggagacccccaggtgcctctgcacccccaagtttttatataaatttcatatt 15234915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 1076141 - 1076072
Alignment:
Q  67 ccaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||||||  ||||| | ||| ||||||||||||||| |||||||||||||||||||||||    
T  1076141 ccaggggcggatctctttggagacccccagatgccactgcaccccccagtttttatataaatttcatatt 1076072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 11907820 - 11907776
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccc 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  11907820 caggggcggatctcttcagagactcccaggtgccactgcaccccc 11907776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 44945004 - 44945071
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    ||||||||||||||||  ||||| | ||||||||||| ||||||| |||||||||||||||||||||||    
T  44945004 caggggcggatctctttggagacccccaggtgccactccaccccc-agtttttatataaatttcatatt 44945071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 17756574 - 17756638
Alignment:
Q  71 gggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||  |||||||  ||||||||||||||| || | |||||||||||||||||||||    
T  17756574 gggcggatctctttggagactccaaggtgccactgcacctcc-aatttttatataaatttcatatt 17756638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 21809368 - 21809301
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    ||||||||||||||||  ||||  | ||||||||||||||||||| |||||| |||||||| |||||||    
T  21809368 caggggcggatctctttggagatcctcaggtgccactgcaccccc-agttttgatataaatatcatatt 21809301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 49017103 - 49017059
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccc 112  Q
    |||||||||||||||| |||||| | |||||||||||||||||||    
T  49017103 caggggcggatctctttagagacccccaggtgccactgcaccccc 49017059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 1076047 - 1075938
Alignment:
Q  161 tgttgttgcagcggttaagcagtcccttcagtgtataaaaggtcgcgtgttcgatccttagcaccctg-ttttttataattctaagcgaatttttcttat 259  Q
    ||||||| ||| ||||| || |||| |||| ||| ||||| || | ||||| ||||| ||||| |||  |||||||||||| | |||||||||||||| |    
T  1076047 tgttgttccagtggttatgcggtcc-ttcaatgtgtaaaaagttgtgtgtttgatccctagcatcctccttttttataatttttagcgaatttttctttt 1075949  T
Q  260 tttattcaaaa 270  Q
    |||||||||||    
T  1075948 tttattcaaaa 1075938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 4038362 - 4038423
Alignment:
Q  67 ccaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaat 128  Q
    ||||||||||||||||  |||||| |||| |||||||||||||| | |  ||||||||||||    
T  4038362 ccaggggcggatctctgtagagacccacatgtgccactgcacccaccaaattttatataaat 4038423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 27400247 - 27400292
Alignment:
Q  67 ccaggggcggatctcttcagagactcacaggtgccactgcaccccc 112  Q
    |||||| ||||||||||||||||| | |||||| ||||||||||||    
T  27400247 ccagggacggatctcttcagagacccccaggtgtcactgcaccccc 27400292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 36723894 - 36723963
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccct-agtttttatataaatttcatatt 136  Q
    ||||||||||||||||  ||||| | ||| ||||||| | |||||  |||||||||||||||||||||||    
T  36723894 caggggcggatctctttggagacccccagatgccacttcccccccccagtttttatataaatttcatatt 36723963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 43080082 - 43080041
Alignment:
Q  229 ttttttataattctaagcgaatttttcttattttattcaaaa 270  Q
    ||||| |||||||| |||||||||||| ||||||||||||||    
T  43080082 tttttaataattcttagcgaatttttcatattttattcaaaa 43080041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 7e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 17549143 - 17549218
Alignment:
Q  61 ttggaaccaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||| ||||||||||||||||  ||||| | |||||||| |||||||||| |||||||||||||||||||||||    
T  17549143 ttggaatcaggggcggatctctttggagacccccaggtgcctctgcacccccaagtttttatataaatttcatatt 17549218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 4428955 - 4428887
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    ||||||||||||||||  ||||| |  |||||||||||||||||| || ||||||||||||||||||||    
T  4428955 caggggcggatctctttggagacccctaggtgccactgcaccccccagattttatataaatttcatatt 4428887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 31736969 - 31736902
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||| |||||||  ||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  31736969 caggggcgaatctctttggagacccccaggtgccactgcaccccc-agtttttatataaatttcatatt 31736902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 37101867 - 37101825
Alignment:
Q  94 caggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  37101867 caggtgccactgcaccccctaatttttatataaatttcatatt 37101825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 37023038 - 37022978
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaat 128  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| |   |||||||||||    
T  37023038 caggggcggatctcttcagagacccccaggtgccactgcaccccccaacatttatataaat 37022978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 14028370 - 14028303
Alignment:
Q  69 aggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||||  ||||| | ||||||| ||||||||||| |||||| |||||||| |||||||    
T  14028370 aggggcggatctctttggagacccccaggtgcaactgcaccccccagttttaatataaatatcatatt 14028303  T

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Target: scaffold0001 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 181480 - 181549
Alignment:
Q  67 ccaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||||||  ||||| | ||| |||||||||||||||||||||| ||||||||||||||||    
T  181480 ccaggggcggatctctttggagacccccagatgccactgcaccccctagttttaatataaatttcatatt 181549  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 8823662 - 8823596
Alignment:
Q  70 ggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||| |||||| | ||||||||||||||||||| |||||| |||||||| |||||||    
T  8823662 ggggcggatctctttagagaccctcaggtgccactgcaccccccagttttgatataaatatcatatt 8823596  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 16204738 - 16204814
Alignment:
Q  66 accaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatattgtgcat 142  Q
    |||||||||||||||||| |||||| | ||||||||||||||||||| |   ||||||||||| ||||||| |||||    
T  16204738 accaggggcggatctctttagagacccccaggtgccactgcaccccccaacgtttatataaatatcatattatgcat 16204814  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 45071008 - 45071071
Alignment:
Q  71 gggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||  ||||| | |||||||||||||||||||  ||||||||||||||||||||||    
T  45071008 gggcggatctctttggagaccc-caggtgccactgcacccccc-gtttttatataaatttcatatt 45071071  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 42842068 - 42841999
Alignment:
Q  65 aaccaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||| |||||||||| |||||| | || |||||||||||||||  || |||||||||||| |||||||    
T  42842068 aaccagggacggatctctttagagacccgcaagtgccactgcacccc--agcttttatataaatatcatatt 42841999  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 35187690 - 35187645
Alignment:
Q  67 ccaggggcggatctcttcagagactcacaggtgccactgcaccccc 112  Q
    ||||||||||||||||| |||||| | ||| |||||||||||||||    
T  35187690 ccaggggcggatctctttagagacccccagatgccactgcaccccc 35187645  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 43822971 - 43822902
Alignment:
Q  67 ccaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| |  ||||||||| || |||||||    
T  43822971 ccaggggcggatctcttcagagacccccaggtgccactgcaccccccaaattttatatatatatcatatt 43822902  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 13284333 - 13284270
Alignment:
Q  73 gcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||  ||||| | ||||||||||||||||| | |||||| |||||||| |||||||    
T  13284333 gcggatctctttggagacccccaggtgccactgcacccaccagttttgatataaatatcatatt 13284270  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 32164834 - 32164793
Alignment:
Q  229 ttttttataattctaagcgaatttttcttattttattcaaaa 270  Q
    ||||| |||||||| |||||||||||| ||||||||||||||    
T  32164834 tttttaataattcttagcgaatttttcatattttattcaaaa 32164793  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 42641995 - 42641928
Alignment:
Q  69 aggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||||  ||||| | ||||||||||||||||||| || |||||||||||||| |||||    
T  42641995 aggggcggatctctttggagacccccaggtgccactgcacccccgaggttttatataaattttatatt 42641928  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 8541097 - 8541165
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||||| |||||| | ||||||||||||||||||| |   ||||||||||| |||||||    
T  8541097 caggggcggatctctttagagacccccaggtgccactgcaccccccaacatttatataaatatcatatt 8541165  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 47278408 - 47278341
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||||| |||||| | ||||||||||||||||||| | | ||||||||||| |||||||    
T  47278408 caggggcggatctctttagagacccccaggtgccactgcaccccc-aatatttatataaatatcatatt 47278341  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 43410238 - 43410317
Alignment:
Q  192 tgtataaaaggtcgcgtgttcgatcct-tagcaccctgttttttataattctaagcgaatttttcttattttattcaaaa 270  Q
    ||||| |||||||||| ||| |||||  || ||||||  ||||||||||||| |||||||||||||||||||||| ||||    
T  43410238 tgtattaaaggtcgcgcgtttgatcccctaacaccctcctttttataattcttagcgaatttttcttattttattaaaaa 43410317  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 25644575 - 25644645
Alignment:
Q  66 accaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    ||||||||| ||||||||  ||||| | ||| ||||| ||||||||| |||||| ||||||||||||||||    
T  25644575 accaggggcagatctctttggagaccctcagatgccattgcaccccccagttttaatataaatttcatatt 25644645  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 47099852 - 47099889
Alignment:
Q  99 gccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||| |||||||||||||||||||||||    
T  47099852 gccactgcaccccccagtttttatataaatttcatatt 47099889  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 27813512 - 27813556
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccc 112  Q
    |||||||||||||||| |||||| | |||||||||||||||||||    
T  27813512 caggggcggatctctttagagacccccaggtgccactgcaccccc 27813556  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 47099984 - 47100025
Alignment:
Q  229 ttttttataattctaagcgaatttttcttattttattcaaaa 270  Q
    |||||||||||| | |||||||||||||| ||||||||||||    
T  47099984 ttttttataatttttagcgaatttttctttttttattcaaaa 47100025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 1787322 - 1787393
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatattgtgcat 142  Q
    ||||||||||||||||||||||||| |||||  |||||||||||  ||||| ||||||||||||||||| |||||    
T  1787322 caggggcggatctcttcagagactc-caggt--cactgcacccctcagtttatatataaatttcatattatgcat 1787393  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 4198200 - 4198269
Alignment:
Q  66 accaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||| |||||||||||||  ||||| | ||||||||||||||||||| || ||||||||||||||||||||    
T  4198200 accaagggcggatctctttggagaccc-caggtgccactgcaccccccaggttttatataaatttcatatt 4198269  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 36565848 - 36565779
Alignment:
Q  67 ccaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||||||   |||  | ||||||||||||||||||| || ||||||||||||||||||||    
T  36565848 ccaggggcggatctctttgaagatccccaggtgccactgcaccccccagattttatataaatttcatatt 36565779  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 46671588 - 46671531
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatata 125  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| |  |||||||||    
T  46671588 caggggcggatctcttcagagacccccaggtgccactgcaccccccaaattttatata 46671531  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 25160709 - 25160642
Alignment:
Q  68 caggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    |||||||||||||||| |||||| |  |||||||||||||||||| |  |||||||||||| |||||||    
T  25160709 caggggcggatctctttagagacccctaggtgccactgcacccccga-cttttatataaatatcatatt 25160642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 16632369 - 16632324
Alignment:
Q  67 ccaggggcggatctcttcagagactcacaggtgccactgcaccccc 112  Q
    |||||||| |||||||| |||||| | |||||||||||||||||||    
T  16632369 ccaggggcagatctctttagagacccccaggtgccactgcaccccc 16632324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 43671495 - 43671450
Alignment:
Q  67 ccaggggcggatctcttcagagactcacaggtgccactgcaccccc 112  Q
    ||||| ||||||||||| |||||| | |||||||||||||||||||    
T  43671495 ccaggagcggatctctttagagacccccaggtgccactgcaccccc 43671450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 4651 - 4582
Alignment:
Q  67 ccaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||| |   ||||||||||| |||||||    
T  4651 ccaggggcggatctctttagagacccccaggtgccactgcaccccccaacatttatataaatatcatatt 4582  T

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Target: scaffold0274 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 4121 - 4052
Alignment:
Q  67 ccaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaatttcatatt 136  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||| |   ||||||||||| |||||||    
T  4121 ccaggggcggatctctttagagacccccaggtgccactgcaccccccaacatttatataaatatcatatt 4052  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 19779921 - 19779875
Alignment:
Q  72 ggcggatctcttcagagactcacaggtgccactgcaccccctagtttt 119  Q
    ||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  19779921 ggcggatctcttcagagaccc-caggtgccactgcaccccccagtttt 19779875  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 37044966 - 37045028
Alignment:
Q  66 accaggggcggatctcttcagagactcacaggtgccactgcaccccctagtttttatataaat 128  Q
    |||||||||| ||||||||| |||| | ||||||||||||||||||| |   |||||||||||    
T  37044966 accaggggcgaatctcttcatagacccccaggtgccactgcaccccccaacatttatataaat 37045028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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