View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4679-Insertion-2 (Length: 562)
Name: NF4679-Insertion-2
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 206 - 562
Target Start/End: Complemental strand, 3073321 - 3072966
Alignment:
| Q |
206 |
tcatatctaatcgccacacaagaggaaaggaagaataatgtattccaaggaaattttctttaagcatggataacaattttcttcagtgaaaatatagaaa |
305 |
Q |
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| T |
3073321 |
tcatatctaattgccacacaagaggaaaggaagaataatgtattccaaggaaattttctttaagcatggataacaattttcttcagtgaaaatatagaaa |
3073222 |
T |
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| Q |
306 |
aattcccaattttgatgttaagacgttacaatttactactcattgccaatacttaaacacgctagcatgaggatatgaaacaaaaataataactgacgac |
405 |
Q |
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| T |
3073221 |
aattcccaattttgatgtta-gacgttacaatttactactcattgccaatacttaaacacgctagcatgaggatatgaaacaaaaataataactgacgac |
3073123 |
T |
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| Q |
406 |
acgtataaaccactttcatgtaagcacacatacctttatgttgtgtggtccagagccaaacttctcatctctacgaggatgaaaatgcaaaaccttcatt |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3073122 |
acgtataaaccactttcatgtaagcacacatacctttatgttttgtggtccagagccaaacttctcgtctctacgaggatgaaaatgcaaaaccttcatt |
3073023 |
T |
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| Q |
506 |
attgttaacttgtccgtctcacttagtgtctcatcaatctgatacctacatagacaa |
562 |
Q |
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| T |
3073022 |
attgttaacttgtccgtctcacttagtgtctcatcaatctgatacctacatagacaa |
3072966 |
T |
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