View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4679_high_1 (Length: 803)
Name: NF4679_high_1
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 42 - 715
Target Start/End: Complemental strand, 2348987 - 2348314
Alignment:
| Q |
42 |
cacttggaatctttagtttcattggacaaagaaactagagaatgggaacagaggtttagcggcaatgtcaccttgagggctgcggattactgctagatgg |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348987 |
cacttggaatctttagtttcattggacaaagaaactagagaatgggaacagaggtttagcggcaatgtcaccttgagggctgcggattactgctagatgg |
2348888 |
T |
|
| Q |
142 |
aggcattttagagctctgaagggctcctgtgagtttgtaactgaatcaataagagatgacaaatgaactgacagatcgcacctggatgagggcggaacaa |
241 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2348887 |
aggcatgtcggagctctgaagggctcctgtgagtttgtaactgaatcaataagagatgacaaacgaactgacagatcgcacctggatgagggcggaacaa |
2348788 |
T |
|
| Q |
242 |
caggatgaagtgtggatgagtacagtagtagcaagaatcgtgttcgatttgatgcgaaaactgcttatttatacgcctttaagaaaatccgttacaaacc |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348787 |
caggatgaagtgtggatgagtacagtagtagcaagaatcgtgttcaatttgatgcgaaaactgcttatttatacgcctttaagaaaatccgttacaaacc |
2348688 |
T |
|
| Q |
342 |
tattatcttaattcctgatcataccccatttaaggcttaatataatttaatcacggtcaatcagtgttagcgattgtggctggccgaaagcccaaaatcc |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2348687 |
tattatcttaattcctgatcataccccatttaaggcttaatataatttaatcacggtcaatcagtgttatcgattgtggctggccgaaagcccaaaatcc |
2348588 |
T |
|
| Q |
442 |
tccataaaacaccagggcactgccatccttcacaaattggccatgacagctgtctcaaaatctgccaccgcagtccaccatggccatgacaacactttgg |
541 |
Q |
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| T |
2348587 |
tccataaaacaccagggcactgccatccttcacaaattggccatgacagctgtctcaaaatctgccaccgcagtccaccatggccatgacaacactttgg |
2348488 |
T |
|
| Q |
542 |
ttaatgaagttatgaaagtcacatgactttttgaccgaccgagtaagattgagcggcaggtggtttagaatattatacatattactctcctaatcatagt |
641 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348487 |
ttaatcaagttatgaaagtcacatgactttttgatcgaccgagtaagattgagcggcaggtggtttagaatattatacatattactctcctaatcatagt |
2348388 |
T |
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| Q |
642 |
taaaagtcaggtattattatccatgcacacattaaattagaaggattttaattttttaagcatccaatacttaa |
715 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348387 |
taaaagtcaggcattattatccatgcacacattaaattagaaggattttaattttttaagcatccaatacttaa |
2348314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 457 - 525
Target Start/End: Original strand, 41190990 - 41191058
Alignment:
| Q |
457 |
ggcactgccatccttcacaaattggccatgacagctgtctcaaaatctgccaccgcagtccaccatggc |
525 |
Q |
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||||| |||| ||||||||||||||||||| ||| | | |||||||||||||||| ||||||||||| |
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| T |
41190990 |
ggcaccgccacccttcacaaattggccatggcagttataagaaaatctgccaccgcaatccaccatggc |
41191058 |
T |
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