View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4679_high_11 (Length: 414)

Name: NF4679_high_11
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4679_high_11
NF4679_high_11
[»] chr6 (12 HSPs)
chr6 (1-396)||(2568090-2568485)
chr6 (4-149)||(2593055-2593199)
chr6 (12-149)||(2635029-2635164)
chr6 (262-385)||(2671720-2671846)
chr6 (257-390)||(2624311-2624444)
chr6 (169-240)||(2671597-2671668)
chr6 (245-387)||(2592796-2592940)
chr6 (167-228)||(2640599-2640660)
chr6 (169-235)||(2634966-2635032)
chr6 (1-53)||(2562052-2562104)
chr6 (144-229)||(2592998-2593086)
chr6 (169-224)||(2451744-2451799)
[»] scaffold0103 (2 HSPs)
scaffold0103 (12-149)||(4845-4980)
scaffold0103 (169-235)||(4977-5043)


Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 2568090 - 2568485
Alignment:
Q  1 aagttttacactaagttgttaggaaatattctacttcaagttgttctacatccattggtaaacaagtgcatatgcatttaatcaaaatcgacgttaacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2568090 aagttttacactaagttgttaggaaatattctacttcaagttgttctacatccattggtaaacaagtgcatatgcatttaatcaaaatcgacattaacaa 2568189  T
Q  101 tattaatacaattctcaaataagaggtggaattagactacttcaataagaggtaaaacaagattacagtaagtgtcatctccctaactcccattattctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2568190 tattaatacaattctcaaataagaggtggaattagactacttcaataagaggtaaaacaagattacagtaagtgtcatctccctaactcccattattctc 2568289  T
Q  201 aaggtgggagccaagattttaatcatatatgatattgagagcaatacaaaataactatatagtaattaacataggaattgtcttacgtttgaaaaaccaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2568290 aaggtgggagccaagattttaatcatatatgatattgagagcaatacaaaataactatatagtaattaacataggaattgtcttatgtttgaaaaaccaa 2568389  T
Q  301 caattttgatgattgtacaaatgaaattttttacaagctaagggacaaccaatttccctaaacctcctcaattttattttcaatttcacctgttat 396  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2568390 caattttgatgattgtacaaatgaaattttttagaagctaagggacaaccaatttccgtaaacctcctcaattttattttcaatttcacctgttat 2568485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 2593199 - 2593055
Alignment:
Q  4 ttttacactaagttgttaggaaatattctacttcaagttgttctacatccattggtaaacaagtgcatatgcatttaatcaaaatcgacgttaacaatat 103  Q
    |||||||  ||||||||||||||| |||||||||||||| |||||||||  | || || ||||| |||||||||| ||||||||| ||| ||||||||||    
T  2593199 ttttacatcaagttgttaggaaatgttctacttcaagtt-ttctacatcgctagggaatcaagtacatatgcattaaatcaaaattgacattaacaatat 2593101  T
Q  104 taatacaattctcaaataagaggtggaattagactacttcaataag 149  Q
    |||||||||| | |||||||||||  ||  ||||||||||||||||    
T  2593100 taatacaatttttaaataagaggttaaacaagactacttcaataag 2593055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 2635164 - 2635029
Alignment:
Q  12 taagttgttaggaaatattctacttcaagttgttctacatccattggtaaacaagtgcatatgcatttaatcaaaatcgacgttaacaatattaatacaa 111  Q
    ||||||||||||||||| ||||||| ||||| ||||||||| || ||||| ||||| |||||||||| ||||||||| ||| ||||||||||||||||||    
T  2635164 taagttgttaggaaatagtctactt-aagtt-ttctacatcgataggtaatcaagtacatatgcattaaatcaaaattgacattaacaatattaatacaa 2635067  T
Q  112 ttctcaaataagaggtggaattagactacttcaataag 149  Q
     | |||||||| |||| |||  ||||||||||||||||    
T  2635066 ctttcaaataataggttgaacaagactacttcaataag 2635029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 262 - 385
Target Start/End: Original strand, 2671720 - 2671846
Alignment:
Q  262 gtaattaacataggaattgtcttacgtttgaaaaaccaacaattttgatgattgtacaaatgaaattttttacaagctaaggga-caaccaatttcccta 360  Q
    ||||||||||||||||||||  || ||||||||||||||||||||||||||||||||| ||||||  ||||  ||||||| ||| ||| |||| ||| ||    
T  2671720 gtaattaacataggaattgtgctatgtttgaaaaaccaacaattttgatgattgtacagatgaaaacttttggaagctaaaggagcaaacaatctcctta 2671819  T
Q  361 aacctc--ctcaattttattttcaatt 385  Q
    ||||||  ||||||||| |||||||||    
T  2671820 aacctcttctcaattttcttttcaatt 2671846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 390
Target Start/End: Complemental strand, 2624444 - 2624311
Alignment:
Q  257 atatagtaattaacataggaattgtcttacgtttgaaaaaccaacaattttgatgattgtacaaatgaaattttttacaagctaagggacaaccaatttc 356  Q
    |||||||||||| ||||  |||||| ||| ||| |||||||| |||||||||||||||||| |||||  |||||||  |||||||||   ||||||||||    
T  2624444 atatagtaattagcatataaattgtgttatgttagaaaaacctacaattttgatgattgtagaaatg--attttttggaagctaaggtgaaaccaatttc 2624347  T
Q  357 cctaaac--ctcctcaattttattttcaatttcacc 390  Q
     || |||  || ||||||||| ||||||||||||||    
T  2624346 tctgaacttcttctcaattttcttttcaatttcacc 2624311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 2671597 - 2671668
Alignment:
Q  169 taagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatatatgatattgaga 240  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||||  ||||||| |||||||||||| ||||    
T  2671597 taagtgtcatctccctaactccccttattttcaaggtaggagccacaattttaaccatatatgatatagaga 2671668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 387
Target Start/End: Complemental strand, 2592940 - 2592796
Alignment:
Q  245 tacaaaataactatatagtaattaacataggaattgtcttacgtttgaaaaaccaacaattttgatgattgtacaaatgaaattttttacaagctaaggg 344  Q
    ||||| ||||| ||||||| |||| |||||||||||| ||| ||| || ||||| ||||||||||||||| || |||||||| ||||   ||||||||      
T  2592940 tacaatataaccatatagttattatcataggaattgtgttatgttagacaaacctacaattttgatgattatagaaatgaaaattttaggaagctaagtt 2592841  T
Q  345 acaaccaatttccctaaacctc--ctcaattttattttcaatttc 387  Q
      ||||||||||| | ||||||  |||| |||| |||||||||||    
T  2592840 gaaaccaatttccttgaacctcttctcagttttcttttcaatttc 2592796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 2640599 - 2640660
Alignment:
Q  167 agtaagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatat 228  Q
    ||||||| ||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||    
T  2640599 agtaagtatcatctccctaactccccttattttcaagctggaagccaagattttaatcatat 2640660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 2635032 - 2634966
Alignment:
Q  169 taagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatatatgatat 235  Q
    ||||||||||||||||||||||  ||||| || |||||||||||| | ||||| |||||||||||||    
T  2635032 taagtgtcatctccctaactccgcttattttctaggtgggagccatggttttattcatatatgatat 2634966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2562052 - 2562104
Alignment:
Q  1 aagttttacactaagttgttaggaaatattctacttcaagttgttctacatcc 53  Q
    |||||||||| |||| | ||||||||||||||||| |||||||||||||||||    
T  2562052 aagttttacattaagatattaggaaatattctactacaagttgttctacatcc 2562104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 2593086 - 2592998
Alignment:
Q  144 aataagaggtaaaacaagattac---agtaagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatata 229  Q
    |||||||||| |||||||| |||   | ||||||||||||||||||||||  ||||| || |||||||||||| | ||||| |||||||    
T  2593086 aataagaggttaaacaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgggagccatggttttattcatata 2592998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 2451799 - 2451744
Alignment:
Q  169 taagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatc 224  Q
    ||||||| || |||| ||||||| ||||| |||||||||||||||| |||||||||    
T  2451799 taagtgtgatttcccaaactccctttattttcaaggtgggagccaatattttaatc 2451744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 4845 - 4980
Alignment:
Q  12 taagttgttaggaaatattctacttcaagttgttctacatccattggtaaacaagtgcatatgcatttaatcaaaatcgacgttaacaatattaatacaa 111  Q
    ||||||||||||||||| ||||||| ||||| ||||||||| || ||||| ||||| |||||||||| ||||||||| ||| ||||||||||||||||||    
T  4845 taagttgttaggaaatagtctactt-aagtt-ttctacatcgataggtaatcaagtacatatgcattaaatcaaaattgacattaacaatattaatacaa 4942  T
Q  112 ttctcaaataagaggtggaattagactacttcaataag 149  Q
     | |||||||| |||| |||  ||||||||||||||||    
T  4943 ctttcaaataataggttgaacaagactacttcaataag 4980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 4977 - 5043
Alignment:
Q  169 taagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatatatgatat 235  Q
    ||||||||||||||||||||||  ||||| || |||||||||||| | ||||| |||||||||||||    
T  4977 taagtgtcatctccctaactccgcttattttctaggtgggagccatggttttattcatatatgatat 5043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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