View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4679_high_13 (Length: 357)

Name: NF4679_high_13
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4679_high_13
NF4679_high_13
[»] chr1 (2 HSPs)
chr1 (90-255)||(37368486-37368651)
chr1 (16-73)||(37368425-37368482)
[»] scaffold0003 (2 HSPs)
scaffold0003 (314-351)||(178582-178619)
scaffold0003 (314-351)||(185523-185560)
[»] chr5 (4 HSPs)
chr5 (314-351)||(3692688-3692725)
chr5 (314-351)||(3874062-3874099)
chr5 (285-317)||(10027758-10027790)
chr5 (285-317)||(30343776-30343808)
[»] chr3 (1 HSPs)
chr3 (314-351)||(11371384-11371421)
[»] scaffold0262 (1 HSPs)
scaffold0262 (285-317)||(21777-21809)
[»] scaffold0225 (1 HSPs)
scaffold0225 (285-317)||(11712-11744)
[»] scaffold0118 (2 HSPs)
scaffold0118 (285-317)||(22943-22975)
scaffold0118 (285-317)||(25898-25930)
[»] scaffold0029 (1 HSPs)
scaffold0029 (285-317)||(139688-139720)
[»] scaffold0002 (1 HSPs)
scaffold0002 (285-317)||(317154-317186)
[»] chr8 (1 HSPs)
chr8 (285-317)||(21111328-21111360)
[»] chr7 (1 HSPs)
chr7 (285-317)||(42234765-42234797)
[»] chr4 (1 HSPs)
chr4 (285-317)||(55556508-55556540)
[»] chr2 (3 HSPs)
chr2 (285-317)||(24248535-24248567)
chr2 (285-317)||(24249109-24249141)
chr2 (285-317)||(24261003-24261035)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 90 - 255
Target Start/End: Original strand, 37368486 - 37368651
Alignment:
Q  90 attcatcaacaaatgccatcaaatatcgatcacttatgagcttattttcaaagcatgataaagcctttactatgttttgccctccattcagctcaccatc 189  Q
    ||||||||||||||||||| |||| | | ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||    
T  37368486 attcatcaacaaatgccattaaatgttggtcacttacgagcttattttcaaagcatgataaagcctttactatgtcttgccctccatccagctcaccctc 37368585  T
Q  190 tacagcaactgttcaatttcacatatacatgaaatgaaattgtaaatgttagaatgcataagtagc 255  Q
    | |||| |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||    
T  37368586 tgcagccactgttcaatttcacatatatatgaaatgatattgtacatgttagaatgcataagtagc 37368651  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 37368425 - 37368482
Alignment:
Q  16 cataaatctataaaggaagaatacaagaacagccaaaataaataaaagaaaagaatat 73  Q
    ||||||||| | ||||||| || ||| ||||||||||||||||| |||||||||||||    
T  37368425 cataaatctgtgaaggaaggattcaaaaacagccaaaataaatataagaaaagaatat 37368482  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 178582 - 178619
Alignment:
Q  314 aattagtagaatctagtccaagtaattagtataatcta 351  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  178582 aattagtagaatctagtccaagtaattagtagaatcta 178619  T

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Target: scaffold0003; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 185523 - 185560
Alignment:
Q  314 aattagtagaatctagtccaagtaattagtataatcta 351  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  185523 aattagtagaatctagtccaagtaattagtagaatcta 185560  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 3692688 - 3692725
Alignment:
Q  314 aattagtagaatctagtccaagtaattagtataatcta 351  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  3692688 aattagtagaatctagtccaagtaattagtagaatcta 3692725  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 3874099 - 3874062
Alignment:
Q  314 aattagtagaatctagtccaagtaattagtataatcta 351  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  3874099 aattagtagaatctagtccaagtaattagtagaatcta 3874062  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 10027758 - 10027790
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  10027758 taattagtagaatctagtccaagtcttgaaatt 10027790  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 30343808 - 30343776
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  30343808 taattagtagaatctagtccaagtcttgaaatt 30343776  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 11371384 - 11371421
Alignment:
Q  314 aattagtagaatctagtccaagtaattagtataatcta 351  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  11371384 aattagtagaatctagtccaagtaattagtagaatcta 11371421  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 21777 - 21809
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  21777 taattagtagaatctagtccaagtcttgaaatt 21809  T

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Target: scaffold0225 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 11744 - 11712
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  11744 taattagtagaatctagtccaagtcttgaaatt 11712  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 22975 - 22943
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  22975 taattagtagaatctagtccaagtcttgaaatt 22943  T

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Target: scaffold0118; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 25930 - 25898
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  25930 taattagtagaatctagtccaagtcttgaaatt 25898  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 139720 - 139688
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  139720 taattagtagaatctagtccaagtcttgaaatt 139688  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 317186 - 317154
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  317186 taattagtagaatctagtccaagtcttgaaatt 317154  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 21111360 - 21111328
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  21111360 taattagtagaatctagtccaagtcttgaaatt 21111328  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 42234765 - 42234797
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  42234765 taattagtagaatctagtccaagtcttgaaatt 42234797  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 55556540 - 55556508
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  55556540 taattagtagaatctagtccaagtcttgaaatt 55556508  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 24248535 - 24248567
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  24248535 taattagtagaatctagtccaagtcttgaaatt 24248567  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 24249109 - 24249141
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  24249109 taattagtagaatctagtccaagtcttgaaatt 24249141  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 24261035 - 24261003
Alignment:
Q  285 taattagtagaatctggtccaagtcttgaaatt 317  Q
    ||||||||||||||| |||||||||||||||||    
T  24261035 taattagtagaatctagtccaagtcttgaaatt 24261003  T

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