View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4679_high_20 (Length: 266)
Name: NF4679_high_20
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 28129483 - 28129739
Alignment:
| Q |
1 |
tttatatcttttttgtaaccatgtaattggggcatacacaccagcttttgtcgatgattaatctctgtagtggattctctccactcaacatgttttcatt |
100 |
Q |
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| T |
28129483 |
tttatatcttttttgtaaccatgtaattggggcatacacaccagcttttgtcgatgattaaactctgtagtggattctctccactcaacatgttttcatt |
28129582 |
T |
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| Q |
101 |
cagagcgttcaaacccgagactttattttagagattaagagagagtgaagtgatgagtactaaccaatgcaaatccacctctagcgcaccaagtttttgg |
200 |
Q |
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| T |
28129583 |
cagagcgttcaaacccgagactttattttagagattaagagagagtgaagtgatgagtactaaccaatgcaaatccacctctagcgcaccaagtttttgg |
28129682 |
T |
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| Q |
201 |
catggtggtagaacgagcgccataccactctgggagactagttttccccagaataat |
257 |
Q |
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| T |
28129683 |
catggtggtagaacgagcgccataccactctgggagactagttttccccagaataat |
28129739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 28114076 - 28114201
Alignment:
| Q |
136 |
taagagagagtga-agtgatgagtacta---accaatgcaaatccacctctagcgcaccaagtttttg---gcatggtggtagaacgagcgccataccac |
228 |
Q |
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| T |
28114076 |
taagagagagtgatagtgatgagtactactaaccaagccaaatccacctctagggcaccaagcttgtcctagcatttttgaagaacgaatcccataccac |
28114175 |
T |
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| Q |
229 |
tctgggagactagttttccccagaat |
254 |
Q |
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| T |
28114176 |
tctggaagactagttttccccagaat |
28114201 |
T |
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