View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4679_high_21 (Length: 263)
Name: NF4679_high_21
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 49158961 - 49159196
Alignment:
| Q |
11 |
cagagaaaccacctgataataaatggaaacacacagaatacaatagtatatatacaaatgttaaagagcatcttaacaagaatacttgagagcatgttta |
110 |
Q |
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| T |
49158961 |
cagagaaaccacctgataataaatggaaacactcagaatacaatagtatatatacaaatgttaaagagcatcttaacaagaataattgagagcatgttta |
49159060 |
T |
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| Q |
111 |
cttagcacatatatataccatgagcctttgcgacattgttgataagttccataataagcacagtttttcctacaccagcaccaccaaacaatccaatctt |
210 |
Q |
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| T |
49159061 |
cttagcacatatatataccatgagcctttgcgacattgttgataagttccataataagcacagtttttcctacaccagcaccaccaaacaatccaatctt |
49159160 |
T |
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| Q |
211 |
tcctcctctttggtatggtgcaaggagatcaacaac |
246 |
Q |
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| T |
49159161 |
tcctcctctttggtatggtgcaaggagatcaacaac |
49159196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 123 - 246
Target Start/End: Original strand, 49155009 - 49155132
Alignment:
| Q |
123 |
atataccatgagcctttgcgacattgttgataagttccataataagcacagtttttcctacaccagcaccaccaaacaatccaatctttcctcctctttg |
222 |
Q |
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| T |
49155009 |
atataccatgagccttagcaacattgttgataagttccataataagaacggtttttcctacaccagcaccaccaaacaacccaatcttccctcccctttg |
49155108 |
T |
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| Q |
223 |
gtatggtgcaaggagatcaacaac |
246 |
Q |
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| T |
49155109 |
gtatggtgcaagcaggtcaacaac |
49155132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 27959968 - 27959889
Alignment:
| Q |
155 |
agttccataataagcacagtttttcctacaccagcaccaccaaacaatccaatctttcctcctctttggtatggtgcaag |
234 |
Q |
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| T |
27959968 |
agttccatcataagtatacttttgcctaccccagcgcaaccaatcaacccaatatttcctcctctttggtatggtgcaag |
27959889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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