View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4679_high_25 (Length: 232)
Name: NF4679_high_25
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 1104281 - 1104084
Alignment:
| Q |
19 |
ttctggaatccatgtaatgcgttgacgcttctcaagtgtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaact |
118 |
Q |
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| T |
1104281 |
ttctggaatccatgtaatgcgttgacgcttctcaagtgtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtagtaaact |
1104182 |
T |
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| Q |
119 |
tcatttgtattgttcacaaagtttgtttcgacaatttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
216 |
Q |
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| T |
1104181 |
tcatttgtattgttcacaaattttgtttcgacaatttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
1104084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 1087692 - 1087540
Alignment:
| Q |
55 |
tgtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttg---tttcgaca |
151 |
Q |
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| T |
1087692 |
tgtttggttcaaataagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaaca |
1087593 |
T |
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| Q |
152 |
atttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaagg |
204 |
Q |
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| T |
1087592 |
attgaagtaacaatctccacaggtgctccactaaatccaactccattccaagg |
1087540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 213
Target Start/End: Complemental strand, 1072030 - 1071870
Alignment:
| Q |
56 |
gtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgaca--at |
153 |
Q |
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| T |
1072030 |
gtttggttcaaataagttattgaaaccatactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcacaggtgttgtagctataacac |
1071931 |
T |
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| Q |
154 |
ttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcct |
213 |
Q |
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| T |
1071930 |
ttgacgtaataatctccataggtgctccactaaatccaactccattccaaggaccactcct |
1071870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 1047217 - 1047054
Alignment:
| Q |
56 |
gtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgaca--at |
153 |
Q |
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| T |
1047217 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaacaacaacag |
1047118 |
T |
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| Q |
154 |
ttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
216 |
Q |
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| T |
1047117 |
ttgatgtaacaatctccataggcgctccactaaatccaactccattccaaggaccactcctatg |
1047054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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