View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4679_low_11 (Length: 416)
Name: NF4679_low_11
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 405
Target Start/End: Complemental strand, 7810866 - 7810465
Alignment:
| Q |
20 |
tgaatcctcaaccagactctaataccaattgttaaaatcaaacttgatttcactcatcttattaaccatataatgcctttaaatattgtccacaatacaa |
119 |
Q |
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| T |
7810866 |
tgaatcctcaaccagactctaataccaattgttaaaatcaaacttgatttcactcatcttattaaccatataatgcctttaaatattgtccacaatacaa |
7810767 |
T |
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| Q |
120 |
caaaatacaacta----------------tggagtttaactagttactttacttgtttcgcaagtaactatatatcttaatgaactaattaaattaagtc |
203 |
Q |
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| T |
7810766 |
caaaatacaactacaacaaaatacaactatggagtttaactagttactttacttgtttcgcaagtaactatatatcttaatgaactaattaaattaagtc |
7810667 |
T |
|
| Q |
204 |
ataagctagattactatattacggttaacgtattatgcatacctannnnnnnggatcatgctaaactactctctctgagatactagttaagaaagtaaaa |
303 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7810666 |
ataagctagattactatatgacggttaacgtattatgcataccta-ttttttggatcatgctaaactactctctctgagatactagttaagaaagtaaaa |
7810568 |
T |
|
| Q |
304 |
aata-nnnnnnnnnattgaaaacgatgannnnnnnactttcaataagttgaacgtgccatattttactacataccgatacaagatttctacattagtttt |
402 |
Q |
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|||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7810567 |
aatatcttcttttttttaaaaacgatgatttttttacttttaataagttgaacgtgccatattttactacataccgatacaagatttctacattagtttt |
7810468 |
T |
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| Q |
403 |
ctt |
405 |
Q |
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| T |
7810467 |
ctt |
7810465 |
T |
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