View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4679_low_15 (Length: 355)

Name: NF4679_low_15
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4679_low_15
NF4679_low_15
[»] chr6 (20 HSPs)
chr6 (20-260)||(24247540-24247780)
chr6 (260-343)||(7292746-7292829)
chr6 (260-343)||(26670027-26670110)
chr6 (120-241)||(24223859-24223980)
chr6 (259-343)||(9698351-9698435)
chr6 (263-343)||(30735984-30736064)
chr6 (260-343)||(7273353-7273436)
chr6 (20-72)||(24223779-24223831)
chr6 (260-343)||(7367548-7367631)
chr6 (261-343)||(13743239-13743321)
chr6 (261-343)||(13748739-13748821)
chr6 (20-82)||(24222751-24222813)
chr6 (261-343)||(30014343-30014425)
chr6 (260-339)||(3213399-3213478)
chr6 (260-343)||(26466798-26466881)
chr6 (259-338)||(31109245-31109324)
chr6 (263-343)||(24204005-24204085)
chr6 (263-343)||(27441544-27441624)
chr6 (260-343)||(33242402-33242485)
chr6 (259-339)||(21293699-21293779)
[»] chr5 (13 HSPs)
chr5 (261-343)||(41334681-41334763)
chr5 (260-343)||(7617132-7617215)
chr5 (261-343)||(2614667-2614749)
chr5 (260-343)||(18033981-18034064)
chr5 (261-343)||(22512305-22512387)
chr5 (261-343)||(32473412-32473494)
chr5 (263-343)||(5256997-5257077)
chr5 (260-343)||(33801468-33801551)
chr5 (261-336)||(33855068-33855143)
chr5 (263-344)||(25915005-25915085)
chr5 (260-339)||(38470578-38470657)
chr5 (259-343)||(17208072-17208156)
chr5 (259-343)||(39122451-39122534)
[»] chr7 (22 HSPs)
chr7 (258-343)||(35069718-35069803)
chr7 (256-343)||(5194249-5194336)
chr7 (260-343)||(5015394-5015477)
chr7 (256-343)||(5810942-5811029)
chr7 (261-343)||(24001030-24001112)
chr7 (261-343)||(42538449-42538531)
chr7 (259-343)||(43317441-43317525)
chr7 (263-343)||(44326180-44326260)
chr7 (260-343)||(41861673-41861758)
chr7 (261-343)||(42972852-42972934)
chr7 (263-343)||(43343642-43343722)
chr7 (263-343)||(44416952-44417032)
chr7 (261-343)||(31513287-31513369)
chr7 (261-343)||(45326020-45326102)
chr7 (264-341)||(26898422-26898499)
chr7 (263-343)||(4638217-4638297)
chr7 (263-343)||(10573751-10573831)
chr7 (270-341)||(32029837-32029908)
chr7 (260-343)||(40236918-40237001)
chr7 (259-343)||(9216300-9216383)
chr7 (261-328)||(39998408-39998475)
chr7 (259-296)||(24280661-24280698)
[»] chr3 (24 HSPs)
chr3 (263-343)||(27748565-27748645)
chr3 (259-343)||(25413679-25413763)
chr3 (263-343)||(53581876-53581956)
chr3 (261-343)||(36150130-36150212)
chr3 (261-343)||(42100688-42100770)
chr3 (260-343)||(46941052-46941135)
chr3 (260-343)||(47191044-47191126)
chr3 (262-343)||(54237097-54237178)
chr3 (260-343)||(4190283-4190366)
chr3 (260-343)||(24688420-24688503)
chr3 (252-343)||(42394437-42394528)
chr3 (260-343)||(54246166-54246249)
chr3 (261-343)||(45126946-45127028)
chr3 (262-343)||(40480750-40480831)
chr3 (260-343)||(40808864-40808947)
chr3 (263-343)||(1078229-1078308)
chr3 (260-343)||(29558252-29558335)
chr3 (260-343)||(53273702-53273785)
chr3 (257-343)||(25996264-25996350)
chr3 (261-343)||(34791829-34791911)
chr3 (260-343)||(9434123-9434206)
chr3 (283-344)||(11064739-11064800)
chr3 (260-343)||(10457910-10457993)
chr3 (260-343)||(52627995-52628078)
[»] chr4 (31 HSPs)
chr4 (262-343)||(41878407-41878488)
chr4 (260-343)||(1771284-1771367)
chr4 (260-343)||(25051692-25051775)
chr4 (260-344)||(28988472-28988556)
chr4 (261-344)||(27316730-27316813)
chr4 (261-341)||(27550309-27550389)
chr4 (257-344)||(21687002-21687089)
chr4 (260-343)||(27864563-27864646)
chr4 (260-343)||(33703140-33703223)
chr4 (260-343)||(55966364-55966447)
chr4 (263-343)||(39631102-39631183)
chr4 (258-343)||(48463468-48463553)
chr4 (263-343)||(43514704-43514784)
chr4 (260-343)||(711959-712042)
chr4 (264-339)||(23204800-23204875)
chr4 (256-343)||(27893860-27893947)
chr4 (261-343)||(35017733-35017814)
chr4 (263-343)||(43949819-43949900)
chr4 (263-343)||(43735744-43735824)
chr4 (260-343)||(23035979-23036062)
chr4 (260-343)||(28982840-28982923)
chr4 (261-341)||(12496956-12497036)
chr4 (252-343)||(17619170-17619262)
chr4 (261-343)||(45490331-45490413)
chr4 (260-341)||(960890-960971)
chr4 (256-328)||(3756279-3756351)
chr4 (263-343)||(41327561-41327641)
chr4 (256-343)||(32728352-32728439)
chr4 (261-343)||(55272394-55272476)
chr4 (258-343)||(31680899-31680984)
chr4 (256-341)||(49229684-49229769)
[»] scaffold0119 (1 HSPs)
scaffold0119 (260-343)||(684-767)
[»] chr1 (22 HSPs)
chr1 (256-343)||(43571104-43571191)
chr1 (260-343)||(5489775-5489858)
chr1 (260-343)||(48498980-48499063)
chr1 (256-341)||(50448280-50448365)
chr1 (261-339)||(37814778-37814856)
chr1 (263-343)||(4401329-4401410)
chr1 (259-343)||(750323-750407)
chr1 (260-343)||(44112676-44112759)
chr1 (261-343)||(38335918-38336000)
chr1 (261-343)||(48119628-48119710)
chr1 (263-343)||(7447828-7447907)
chr1 (260-343)||(23989541-23989625)
chr1 (256-343)||(35003289-35003376)
chr1 (256-343)||(41065148-41065235)
chr1 (260-343)||(45639750-45639833)
chr1 (257-343)||(2497580-2497666)
chr1 (260-337)||(24769523-24769600)
chr1 (260-318)||(14427346-14427404)
chr1 (261-343)||(35000131-35000213)
chr1 (261-343)||(46168383-46168465)
chr1 (258-343)||(38113213-38113298)
chr1 (259-343)||(45427763-45427847)
[»] chr8 (25 HSPs)
chr8 (260-343)||(36743501-36743584)
chr8 (261-343)||(11582766-11582848)
chr8 (261-343)||(29705362-29705444)
chr8 (259-343)||(2546994-2547078)
chr8 (263-343)||(42295197-42295277)
chr8 (263-343)||(42699259-42699339)
chr8 (256-343)||(42197453-42197540)
chr8 (260-341)||(30660762-30660843)
chr8 (262-343)||(45397317-45397398)
chr8 (263-343)||(20148762-20148842)
chr8 (263-343)||(26125637-26125717)
chr8 (263-343)||(30912580-30912660)
chr8 (263-343)||(29800968-29801048)
chr8 (263-343)||(33630011-33630091)
chr8 (261-344)||(2165980-2166063)
chr8 (260-343)||(5754902-5754985)
chr8 (260-343)||(35181515-35181598)
chr8 (259-343)||(16603644-16603728)
chr8 (256-343)||(18066736-18066823)
chr8 (260-343)||(34304787-34304870)
chr8 (261-343)||(1375542-1375624)
chr8 (259-343)||(31384662-31384746)
chr8 (260-305)||(19386626-19386671)
chr8 (261-298)||(28977146-28977183)
chr8 (263-343)||(3743773-3743853)
[»] chr2 (23 HSPs)
chr2 (261-343)||(1750414-1750496)
chr2 (260-343)||(12302271-12302354)
chr2 (252-343)||(19047148-19047239)
chr2 (261-343)||(16096747-16096829)
chr2 (253-343)||(30838624-30838714)
chr2 (263-344)||(43490418-43490499)
chr2 (260-343)||(43335781-43335864)
chr2 (261-343)||(13780753-13780835)
chr2 (263-340)||(33229303-33229381)
chr2 (263-343)||(41281992-41282072)
chr2 (260-343)||(16803967-16804050)
chr2 (260-343)||(16843249-16843332)
chr2 (260-343)||(43114556-43114639)
chr2 (261-343)||(12415478-12415560)
chr2 (261-343)||(12427538-12427620)
chr2 (263-343)||(11825672-11825752)
chr2 (259-343)||(18491703-18491787)
chr2 (262-308)||(34817829-34817875)
chr2 (311-343)||(42849876-42849908)
chr2 (256-343)||(14285671-14285758)
chr2 (258-343)||(6518487-6518571)
chr2 (260-296)||(966899-966935)
chr2 (263-343)||(8896601-8896681)
[»] scaffold0385 (1 HSPs)
scaffold0385 (260-343)||(11250-11333)
[»] scaffold0038 (1 HSPs)
scaffold0038 (252-343)||(112646-112737)
[»] scaffold0187 (2 HSPs)
scaffold0187 (259-343)||(14206-14290)
scaffold0187 (259-343)||(24534-24618)
[»] scaffold0003 (1 HSPs)
scaffold0003 (263-343)||(45737-45817)
[»] scaffold0157 (1 HSPs)
scaffold0157 (261-341)||(23441-23521)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 24247540 - 24247780
Alignment:
Q  20 gcatgcatacagcatggtgtggaagcatacttaattaattttgatcaaagtgacgtgaagcatcgatcttagataagccaattcaatagttgctatttta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24247540 gcatgcatacagcatggtgtggaagcatacttaattaattttgatcaaagtgacgtgaagcatcgatcttagataagccaatccaatagttgctatttta 24247639  T
Q  120 tttctaagccaatccaattacacatgttatactttcaggcctttcgcaacttgtccttgaatattctttttctattttgcttgttttttcttgaaaaata 219  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  24247640 tttctaagccaatccaattacacatgttatactttctggcctttcgcaacttgtctttgaatattcttgttctattttgcttgttttttcttgaaaaata 24247739  T
Q  220 ttatctcagtctcaacataatgtatctcttcctttctttta 260  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  24247740 ttatctcaatctcaaaataatgtatctcttcctttctttta 24247780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 7292746 - 7292829
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  7292746 aggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctca 7292829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 26670110 - 26670027
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  26670110 aggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 26670027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 24223859 - 24223980
Alignment:
Q  120 tttctaagccaatccaattacacatgttatactttcaggcctttcgcaacttgtccttgaatattctttttctattttgcttgttttttcttgaaaaata 219  Q
    ||||||| |||||||||||||||||| ||||||| |||| |  ||  || |||||||| | |||||||||| ||||||| |||||||||||| |||||||    
T  24223859 tttctaacccaatccaattacacatgctatacttgcagggcactcagaaattgtccttaagtattctttttttattttgattgttttttctttaaaaata 24223958  T
Q  220 ttatctcagtctcaacataatg 241  Q
    ||| ||||||||||| ||||||    
T  24223959 ttacctcagtctcaaaataatg 24223980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 9698435 - 9698351
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||| |||||||| |||| | |||| |||||| |||||||||||||||||||| |||||||||||||    
T  9698435 taggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 9698351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 30735984 - 30736064
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||| ||||||| |||||| |||| ||||||| ||||||||| ||||||||| |||||||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctca 30736064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 7273436 - 7273353
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||| ||||||| ||| ||||||  ||||||||| ||||||||| |||||||||||||    
T  7273436 aggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctca 7273353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 24223779 - 24223831
Alignment:
Q  20 gcatgcatacagcatggtgtggaagcatacttaattaattttgatcaaagtga 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24223779 gcatgcatacagcatggtgtggaagcatacttaattaattttgatgaaagtga 24223831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 7367548 - 7367631
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||| |||||||   ||||||||||||||||||| |||| |  ||||||||||||||||||| |||||||||||||    
T  7367548 aggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctca 7367631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 13743321 - 13743239
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||  |||||||||||| |  ||| ||||||  ||||||||||||||||||| |||||||||||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctca 13743239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 13748821 - 13748739
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||  |||||||||||| |  ||| ||||||  ||||||||||||||||||| |||||||||||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctca 13748739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 24222751 - 24222813
Alignment:
Q  20 gcatgcatacagcatggtgtggaagcatacttaattaattttgatcaaagtgacgtgaagcat 82  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  24222751 gcatgcatacaacatggtgtggaagcatacttaattaattttgatgaaagtgacaagaagcat 24222813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 30014343 - 30014425
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| |||||||| |||| | ||||||||| |  |||||||||| |||||||| |||||||||||||    
T  30014343 ggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctca 30014425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 3213399 - 3213478
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcat 339  Q
    ||||||||||||||| ||||| ||||||||||||| |||||| ||||||  |||||||| |||||||||| ||| |||||    
T  3213399 aggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcat 3213478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 26466798 - 26466881
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||| ||||| |||||||| |||||| |||| |||||   ||||||||||| ||||||| |||||||||||||    
T  26466798 aggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctca 26466881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 31109324 - 31109245
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttca 338  Q
    |||||||||||||||||||||| ||||| ||||||| | |||||||||||  ||| | ||||||||||||||||| ||||    
T  31109324 taggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattca 31109245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 24204085 - 24204005
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||  ||||||| ||||||  ||| |||||   ||||||||||||||||||| |||||||||||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctca 24204005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 27441544 - 27441624
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||| ||||| |||||||||  ||| |||| | ||||||||| |||||||||| ||| |||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctca 27441624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 33242402 - 33242485
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||  |||| |||||||||| ||| ||||||  |||||||| ||| |||||| ||| |||||||||    
T  33242402 aggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctca 33242485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 21293779 - 21293699
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcat 339  Q
    |||||||||||||||| ||||| |||||||||||||  ||| | ||||||  |||||||| |||||||||| ||| |||||    
T  21293779 taggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcat 21293699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 41334763 - 41334681
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctca 41334681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 7617132 - 7617215
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||||||  ||||||||||||||||||| |||||||||||||    
T  7617132 aggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctca 7617215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 2614749 - 2614667
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| |||||||| |||| | |||| |||||| |||||||||||||||||||| |||||||||||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 2614667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 18033981 - 18034064
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||| |||||  |||| |||||| |||||||||||||||||||  |||||||||||||    
T  18033981 aggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctca 18034064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 22512305 - 22512387
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| |||||||| |||||  |||| |||||   ||||||||||||||||||| |||||||||||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctca 22512387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 32473494 - 32473412
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| ||||| |||||||||| ||| ||||||  ||| ||||||||||||||| ||| |||||||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctca 32473412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 5256997 - 5257077
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||| |||||  |||||||||||| | |||| ||||||  ||||||||||||||||||| ||| |||||||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctca 5257077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 33801468 - 33801551
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||  |||||||  |||||| |||| |||||   ||||||||||||||||||  |||||||||||||    
T  33801468 aggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctca 33801551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 33855143 - 33855068
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagtt 336  Q
    |||||||||||||||||||| |||||||| |||||| |||| ||||||  |||||||||| | |||||| ||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaagtt 33855068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 344
Target Start/End: Complemental strand, 25915085 - 25915005
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctcat 344  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||||  |||||||| | |||||||  || |||||||||||    
T  25915085 aaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtatta-gaatatttttgtaggttcatctcat 25915005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 38470578 - 38470657
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcat 339  Q
    ||||||||||||||| ||||| |||||||||||||   |||| ||||||  |||||||| |||||||||| ||| |||||    
T  38470578 aggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcat 38470657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 17208072 - 17208156
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||| ||||||| ||||| |||||||| | ||| ||||||  ||| |||| ||| |||||| ||| |||||||||    
T  17208072 taggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctca 17208156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 39122534 - 39122451
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||| | ||||||||||||  |||||||||||| || |||| |||||  |||||||||| |||||||| ||| |||||||||    
T  39122534 taggaaactattacatgaacaccttttattcatacatctaattagacacc-catgtattaggaatattttggtaaattcatctca 39122451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 35069718 - 35069803
Alignment:
Q  258 ttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  35069718 ttaggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 35069803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 5194336 - 5194249
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||| ||||| ||| |||||||||||||| |||||||||    
T  5194336 ttttaggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctca 5194249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 5015394 - 5015477
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||||||||||  |||||  |||| ||||||| ||||||||||||||||||| |||||||||||||    
T  5015394 aggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctca 5015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 5811029 - 5810942
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||| |||||||||||||||| ||| |||||||| |||||| |||| |||||| ||| ||||||||||||||||||||||||||||||    
T  5811029 tttttggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctca 5810942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 24001112 - 24001030
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| |||||||| |||| | |||| |||||| |||||||||||||||||||| |||||||||||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 24001030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 42538531 - 42538449
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| |||||||| |||| | |||| |||||| |||||||||||||||||||| |||||||||||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 42538449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 43317441 - 43317525
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||||  ||||||||||||||||||| |||| | ||||  |||||||||||||||||| |||||||||    
T  43317441 taggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctca 43317525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 44326180 - 44326260
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||| ||||| ||||||||||||| | |||| ||||||| || |||||||||||||||| |||||||||||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctca 44326260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 41861673 - 41861758
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtat--tagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||||| |||||||  ||| ||||||||| |||||| ||||||    
T  41861673 aggaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaagtttatctca 41861758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 42972852 - 42972934
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||| ||||||  |||||||| |||||  |||| ||||||| ||||||||||||||||||| |||||||||||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctca 42972934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 43343722 - 43343642
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||   ||||||  ||||||  ||| ||||||  |||||||||||||||||||||||||||||||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctca 43343642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 44417032 - 44416952
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||   ||||||  ||||||  ||| ||||||  |||||||||||||||||||||||||||||||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctca 44416952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 31513287 - 31513369
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||||||| |||||||||  ||| || |||  ||| |||| |||||||||| ||| |||||||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctca 31513369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 45326020 - 45326102
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||| |||||||| |||||  |||||||||||| | |||| ||||||  || |||||||||||||||| |||||||||||||    
T  45326020 ggaaagtgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctca 45326102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 26898499 - 26898422
Alignment:
Q  264 aaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatct 341  Q
    |||||||||||||||||  ||||||||||||||  ||| ||||    ||||||||||||||||||| |||||||||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatct 26898422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 4638297 - 4638217
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||  |||||||||||||   ||| ||||||  || ||||| |||||||||| |||||||||||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctca 4638217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 10573751 - 10573831
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||| ||||| ||||||||||||| |  ||| ||||||  |||||||||| |||||||| ||| |||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctca 10573831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 32029908 - 32029837
Alignment:
Q  270 tacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatct 341  Q
    ||||| |||||| ||||||| |||||| |||| ||||||  ||||||||||||||||||| ||| |||||||    
T  32029908 tacataaacactttttattcctacaccccattgtacaccccatgtattagggatattttggtaaattcatct 32029837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 40236918 - 40237001
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| ||||| ||||||| |  ||| ||||||  ||| |||||||| |||||| ||| |||||||||    
T  40236918 aggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctca 40237001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 9216300 - 9216383
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||| |||||||| || | |  ||| ||||||  ||| ||||| ||||||||| |||||||||||||    
T  9216300 taggaaaatgttacatgaacaccctttattcctatatcctattgtacacc-catgcattagagatattttggtaagttcatctca 9216383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 39998408 - 39998475
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatatttt 328  Q
    ||||||||||||||||||||  |||| ||||||| |  ||| ||||||  ||||||||||||||||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 24280698 - 24280661
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacc 296  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  24280698 taggaaaatgttacgtgaacaccctttattcatacacc 24280661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 27748565 - 27748645
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctca 27748645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 25413679 - 25413763
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||||  |||||||||||||    
T  25413679 taggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctca 25413763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 53581956 - 53581876
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||||||||||||||  |||| |||| | ||||||||||||||||||||||||||||||||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctca 53581876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 36150130 - 36150212
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||    
T  36150130 ggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctca 36150212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 42100688 - 42100770
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||||  ||||||||||||||||||| |||||||||||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctca 42100770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 46941052 - 46941135
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||| |||| |||||| ||||||  ||||||||||||||||||| |||||||||||||    
T  46941052 aggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctca 46941135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 47191126 - 47191044
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||||||  ||||||||| |||||||||||||||||||||||    
T  47191126 aggaaaatgttacatgaacaccctttattcctacacctcattgtacacc-catgtattagagatattttgataagttcatctca 47191044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 54237097 - 54237178
Alignment:
Q  262 gaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||| |||||||| |||| | |||| |||||| |||||||||||||||||||| |||||||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 54237178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 4190366 - 4190283
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| ||||| |||||||||  ||| ||||||||||||||||| ||||||||| ||| |||||||||    
T  4190366 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctca 4190283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 24688503 - 24688420
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||  |||||  |||| |||||| |||||||||||||||||||| |||||||||||||    
T  24688503 aggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctca 24688420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 42394528 - 42394437
Alignment:
Q  252 tttcttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||  ||||||||||||||||||| |||||||| ||||   |||| |||||| |||||||||||||||||||| |||||||||||||    
T  42394528 tttctttttagaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctca 42394437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 54246249 - 54246166
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||| |||||| |||| |||||| |||||||||| ||||||||  |||||||||||||    
T  54246249 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctca 54246166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 45127028 - 45126946
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||| ||||| ||||||||||||| | |||| ||||||  ||||||||||||||||||| |||||||||||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctca 45126946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 40480750 - 40480831
Alignment:
Q  262 gaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||| |||||||||||  || |||| |||| | |||||||||||||||||||| |||||||||||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctca 40480831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 40808864 - 40808947
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||| |||||  ||||||| |||||| |||| ||||||  ||||||||||||||||||| |||||||||||||    
T  40808864 aggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctca 40808947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 1078229 - 1078308
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||| |||||||| | ||||||||| ||||||| |||||||| |||||||||  || ||||||||||    
T  1078229 aaaatgttacatgaacaccctttattcctgcacctcattgtacacctaatgtatta-ggatatttttgtaggttcatctca 1078308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 29558335 - 29558252
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||| ||||||| |||||||| ||||||||||||| |||||| |||||| ||| ||||||| |||| ||| ||| |||||||||    
T  29558335 aggacaatgttatatgaacaccctttattcatacatctcattgtacaccctatatattaggaatatattggtaaattcatctca 29558252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 53273785 - 53273702
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||| |||||||   ||||||| || |||||||| |||| |  ||||||||||||||||||| |||||||||||||    
T  53273785 aggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctca 53273702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 25996264 - 25996350
Alignment:
Q  257 tttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||||| ||||| ||||||| || ||| ||||||  || ||||| ||| |||||| ||| |||||||||    
T  25996264 tttaggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctca 25996350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 34791829 - 34791911
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| ||||| |||||||||  ||| || |||| ||| |||||||| ||||| |||| |||||||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctca 34791911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 9434123 - 9434206
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| ||||| ||||||||   ||| ||||||  ||| |||||||| |||||| ||| |||||||||    
T  9434123 aggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctca 9434206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 11064800 - 11064739
Alignment:
Q  283 tttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctcat 344  Q
    ||||||||||||||||||| |||||| ||||  |||| ||||||||||| | ||||||||||    
T  11064800 tttattcatacacctcattgtacaccctatgctttagagatattttgattaattcatctcat 11064739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 10457993 - 10457910
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||  |||| |||||||||  ||| ||||||  ||| |||| |||||||||| ||| || ||||||    
T  10457993 aggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctca 10457910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 52628078 - 52627995
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||| ||||||| ||||| ||||||| |  ||| ||||||| ||| |||| | |||||||| ||| |||||||||    
T  52628078 aggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctca 52627995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 41878407 - 41878488
Alignment:
Q  262 gaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||  |||||||||||||||||||||||||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctca 41878488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 1771367 - 1771284
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||| |||||| |||| ||||||  ||||||||| |||||||||||||||||||||||    
T  1771367 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctca 1771284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 25051692 - 25051775
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||| |||||||||| |||||||| |||||| |||| |||||| |||||||||||||||||||| |||||||||||||    
T  25051692 aggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctca 25051775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 28988472 - 28988556
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctcat 344  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||  ||| | |||||| |||||||||| ||||||||||    
T  28988472 aggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcat 28988556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 261 - 344
Target Start/End: Complemental strand, 27316813 - 27316730
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctcat 344  Q
    ||||||||||| | |||||| |||||||| ||||||||||||||||||  |||||||| |||||||||| ||||||||||||||    
T  27316813 ggaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcatctcat 27316730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 27550309 - 27550389
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatct 341  Q
    |||||||||||||||||||| |||||||  |||||  |||| ||||||| ||||||||||||||||||| |||||||||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 21687002 - 21687089
Alignment:
Q  257 tttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctcat 344  Q
    |||||||||||||||||||||||  |||||||  |||||| ||||||||| ||||||||||||  |||||||  ||||||||||||||    
T  21687002 tttaggaaaatgttacatgaacatcctttatttttacaccccattatacatcttatgtattagaaatattttagtaagttcatctcat 21687089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 27864563 - 27864646
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||| |||||  |||||||||||| | |||| ||||||  ||||||||||||||||||| |||||||||||||    
T  27864563 aggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctca 27864646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 33703140 - 33703223
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||  |||| || ||| ||||||  ||||||||||||||||||| |||||||||||||    
T  33703140 aggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctca 33703223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 55966447 - 55966364
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||| ||||| ||||||||||||| | |||| |||| |  ||||||||||||||||||| |||||||||||||    
T  55966447 aggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctca 55966364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 39631102 - 39631183
Alignment:
Q  263 aaaatgttacatgaacactcttt-attcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||| ||||||||| | |||| |||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  39631102 aaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 39631183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 48463553 - 48463468
Alignment:
Q  258 ttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||| |||||  ||||||||||||  ||||| |||| |  ||||||||||||||||||| |||||||||||||    
T  48463553 ttaggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctca 48463468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 43514784 - 43514704
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||| |||||||| |||||  |||| ||||| | ||||||||||| ||||||| |||||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctca 43514704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 711959 - 712042
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| ||||| |||||||||  ||| |||||| |||| |||| |||||||||| ||| |||||||||    
T  711959 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctca 712042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 23204875 - 23204800
Alignment:
Q  264 aaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcat 339  Q
    |||||||||||||||||||||||||| |||| | |||| |||| | |||||||||||||||||||  |||||||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttttgtaagttcat 23204800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 27893947 - 27893860
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||| |||||||||||| |||||  |||||||||||| | |||| ||||||  ||||||||||||||||||| ||| |||||||||    
T  27893947 ttttagaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctca 27893860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 35017733 - 35017814
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| |||||||| || | |||||| ||||||  ||||| ||||||||||||| |||||||||||||    
T  35017733 ggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaagttcatctca 35017814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 43949900 - 43949819
Alignment:
Q  263 aaaatgttacatgaacactcttt-attcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||| ||||||||||| |||| |||| | ||||||||| ||||||  ||||||||||||||||||| |||||||||||||    
T  43949900 aaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttcatctca 43949819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 43735744 - 43735824
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||| |||||||||||  |||||||| |||| |||||||||||    ||||||||| |||||||||||||||||||||||    
T  43735744 aaaatattacatgaacatcctttattcctacatctcattatacattccatgtattagagatattttgataagttcatctca 43735824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 23035979 - 23036062
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||   |||||||| ||||||  ||| |||||| ||| |||||||||||||||  |||||||||||||    
T  23035979 aggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctca 23036062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 28982923 - 28982840
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||  ||||||  ||| |||| |  || |||||||||||||||| |||||||||||||    
T  28982923 aggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctca 28982840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 12496956 - 12497036
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatct 341  Q
    ||||||||||| |||||||| |||||||| |||||  |||| |||| |  ||||||||| ||||||||| |||||||||||    
T  12496956 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 12497036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 17619262 - 17619170
Alignment:
Q  252 tttctttta-ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||| ||||||||||||||||||||  |||| |||||||||  ||| ||||||  ||| |||| |||||||||| ||| |||||||||    
T  17619262 tttcttttatggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctca 17619170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 45490413 - 45490331
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||  |||||| ||||| |  ||| ||||||| |||||||||||||| |||  ||| |||||||||    
T  45490413 ggaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctca 45490331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 960971 - 960890
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatct 341  Q
    ||||||||||||||||||||| ||||| ||||||||   ||| |||||| |||  |||||||| |||||| ||| |||||||    
T  960971 aggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatct 960890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 3756351 - 3756279
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatatttt 328  Q
    |||||| |||||||||||||||||| ||||| |||||||||  ||| ||||||  ||| |||| |||||||||    
T  3756351 ttttagaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatatttt 3756279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 41327641 - 41327561
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||  |||| ||||||||| ||||| |||| ||||||||||| | || ||| |||||| ||| |||||||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctca 41327561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 32728352 - 32728439
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||||||  ||||| |||||||||  ||| ||||||  ||| |||| ||| |||||  ||| |||||||||    
T  32728352 ttttaggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctca 32728439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 55272476 - 55272394
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||  ||||| ||||||||   ||| ||||||  ||| |||| |||||||||| ||| |||||||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctca 55272394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 31680899 - 31680984
Alignment:
Q  258 ttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||| |||||||||| | |||||  ||||||||||||   |||| ||||||   | |||||||||||||||| |||||||||||||    
T  31680899 ttagaaaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctca 31680984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 49229769 - 49229684
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatct 341  Q
    |||||||||||||||| |||||||  ||||| |||||||||  ||| ||||| | ||| |||| ||||||| || ||| |||||||    
T  49229769 ttttaggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 684 - 767
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  684 aggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 43571191 - 43571104
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||| |||||||||||||||||||| |||||||| ||||||||||| ||||||  ||||||||||||||||||| |||||||||||||    
T  43571191 tttttggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctca 43571104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 5489775 - 5489858
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||| |||| | |||| |||||| |||||||||||||||||||| |||||||||||||    
T  5489775 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 5489858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 48499063 - 48498980
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||||||||||  |||||  |||| ||||||| ||||||||||||||||||| |||||||||||||    
T  48499063 aggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctca 48498980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 50448365 - 50448280
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatct 341  Q
    |||| ||||||||||||||||||||||||||||  |||||  |||| ||||||||||||||||||||||||||  |||||||||||    
T  50448365 tttttggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatct 50448280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 37814778 - 37814856
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcat 339  Q
    |||||||||||||| ||||| ||||||||||||| |||||| ||||||  |||||||| |||||||||| ||| |||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcat 37814856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 4401329 - 4401410
Alignment:
Q  263 aaaatgttacatgaacactcttt-attcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||| |||||||||||||||| |||| ||||| ||||| ||||||  ||||||||| ||||||||| |||||||||||||    
T  4401329 aaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctca 4401410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 750407 - 750323
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||| ||||||| |||  ||| |||||| |||| ||||||  |||||| |||||||||||||||| |||||||||    
T  750407 taggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcatctca 750323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 44112676 - 44112759
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| ||||| |||||||||  ||| ||||||  ||| |||||||| |||||| ||| |||||||||    
T  44112676 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 44112759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 38335918 - 38336000
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| ||||| |||||||||| ||| |||| |  ||| |||| |||||||||| ||| |||||||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctca 38336000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 48119628 - 48119710
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| ||||| |||||||||  ||| ||||||  ||| |||| |||||||||| ||| |||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctca 48119710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 7447828 - 7447907
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||  |||||||| |||| | |||| ||||||  ||||||||  |||||||||||||||||||||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtacaccc-atgtattacagatattttgataagttcatctca 7447907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 23989625 - 23989541
Alignment:
Q  260 aggaaaatgttacatgaacactcttt-attcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||| ||||||||||   ||| || ||| |||||||||||||||||||| ||| || ||||||    
T  23989625 aggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctca 23989541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 35003289 - 35003376
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||| |||||||||||||||||||| ||||| |||||||||  ||| ||||||  ||  |||| |||||||||| ||| |||||||||    
T  35003289 tttttggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctca 35003376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 41065148 - 41065235
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||||||| ||||| |||||||||   || ||||||  ||| |||||||  |||||| ||| |||||||||    
T  41065148 ttttaggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctca 41065235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 45639833 - 45639750
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||||||||| ||||||| |  ||| ||||||  ||  |||| |||||||||| ||| |||||||||    
T  45639833 aggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctca 45639750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 343
Target Start/End: Complemental strand, 2497666 - 2497580
Alignment:
Q  257 tttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||| |||||||||||| |||||  ||||||||||||   |||| ||||||  || ||||| |||||||||| |||||||||||||    
T  2497666 tttagaaaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctca 2497580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 24769600 - 24769523
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttc 337  Q
    ||||||||||| |||||||||  ||||||  |||||  |||| ||||||  ||||||||||||||||||| |||||||    
T  24769600 aggaaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaagttc 24769523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 14427346 - 14427404
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtatta 318  Q
    ||||||||||||||||||||| ||||| |||||||||  ||| ||||||| ||| ||||    
T  14427346 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 35000213 - 35000131
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||  |||| ||||||||   ||| || || | |||||||||||| |||||||||| || ||||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctca 35000131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 46168383 - 46168465
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| ||||| ||||| | |  ||| ||||||  ||| |||| |||||||||| ||| |||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctca 46168465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 38113298 - 38113213
Alignment:
Q  258 ttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||| |||||||| ||||| |||||||||  ||| ||||||  ||| ||||  || |||||| ||| |||||||||    
T  38113298 ttaggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctca 38113213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 45427847 - 45427763
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||| ||  |||| |||||||||  ||| |||||   ||| |||||||| |||||| ||| |||||||||    
T  45427847 taggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctca 45427763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 36743584 - 36743501
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||| |||| | |||| |||||| |||||||||||||||||||| |||||||||||||    
T  36743584 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 36743501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 11582766 - 11582848
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| |||||||| |||| | |||| |||||| |||||||||||||||||||| |||||||||||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 11582848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 29705362 - 29705444
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| |||||||  |||||| |||| ||||||  |||||||||||||||||||||||||||||||||    
T  29705362 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctca 29705444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 2546994 - 2547078
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||||||||||||  |||||  |||| ||||||| ||||||||||||||||||  |||||||||||||    
T  2546994 taggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctca 2547078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 42295197 - 42295277
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||   ||||||||||||||||||| |||||||||||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctca 42295277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 42699259 - 42699339
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||| |||||||| |||||| |||| |||||||||||||||| |||||||||  |||||||||||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctca 42699339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 42197540 - 42197453
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||||||  ||||||| |||||| ||||  ||||  |||||||||||||||||||| |||||||||||||    
T  42197540 ttttaggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctca 42197453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 30660843 - 30660762
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatct 341  Q
    ||||||||||||||||||||| |||||||  |||| | |||| |||||| |||||||||||||||||||| |||||||||||    
T  30660843 aggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatct 30660762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 45397317 - 45397398
Alignment:
Q  262 gaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||| ||||||| |||||||| |||||| |||| |||||| |||||||||||||||||||  |||||||||||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttcatctca 45397398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 20148762 - 20148842
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||| ||||| ||||||||||||| | |||| ||||||| || |||||||||||||||| |||||||||||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctca 20148842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 26125637 - 26125717
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||| ||||| |||||||||||||   |||| |||||| |||||||||||||||||||| |||||||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctca 26125717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 30912660 - 30912580
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||| |||||||| |||||| |||| ||||| | ||||||||||| ||||||| |||||||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctca 30912580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 29801048 - 29800968
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||| |||||  |||||||||||| | |||| ||||||  ||||||||||||||||||| |||||||||||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctca 29800968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 33630091 - 33630011
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||| |||||| ||||| |||||||||||||| |||||| |||| |||||||| |||||  ||| |||||||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctca 33630011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 344
Target Start/End: Complemental strand, 2166063 - 2165980
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctcat 344  Q
    ||||||| ||||||||||||  ||||||| |||||| |||| || |||  ||||||||| ||||||||| ||||||||||||||    
T  2166063 ggaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctcat 2165980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 5754902 - 5754985
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||  ||||||| |||| | |||| |||| |  || |||||||||||||||| |||||||||||||    
T  5754902 aggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctca 5754985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 35181515 - 35181598
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| ||||| |||||||||  ||| ||||||  ||| |||||||| |||||| ||| |||||||||    
T  35181515 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 35181598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 16603728 - 16603644
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||| |||| ||||| |||||||||| ||||||||||  ||| ||||  || |||||| ||| |||||||||    
T  16603728 taggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctca 16603644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 18066823 - 18066736
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||||||| ||||| |||||||    ||| |||| |  ||||||||||||||||||  ||| |||||||||    
T  18066823 ttttaggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctca 18066736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 34304787 - 34304870
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||  ||||| |||||||||  ||| ||||||  ||| |||||||| |||||| ||| |||||||||    
T  34304787 aggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 34304870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 1375542 - 1375624
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||| ||||||||||||  ||||||||||||||  ||| ||||||  || |||||||||||||||| ||| || ||||||    
T  1375542 ggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctca 1375624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 31384662 - 31384746
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||| | |||||||||||| |||||||| ||||    ||| ||||||  |||||||||| |||||||| |||||||||||||    
T  31384662 taggaaagtattacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctca 31384746  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 19386671 - 19386626
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatac 305  Q
    ||||||||||||||||||||| ||||| |||||||||  |||||||    
T  19386671 aggaaaatgttacatgaacaccctttaatcatacaccctattatac 19386626  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 28977146 - 28977183
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctc 298  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  28977146 ggaaaatgttacatgaacaccctttattcctacacctc 28977183  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 3743773 - 3743853
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||| |||  |||| |||||||||| |  | |||||||||||  || ||||| | ||||||||||||||||||||||    
T  3743773 aaaatgttccatatacaccctttattcatccctcccattatacaccccatatattaagtatattttgataagttcatctca 3743853  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 1750414 - 1750496
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| |||||||| |||||| |||| |||||| |||||||||||||||||||  |||||||||||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctca 1750496  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 12302354 - 12302271
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| |||||||  |||||| |||| |||||| |||||||||||||||||||  |||||||||||||    
T  12302354 aggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctca 12302271  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 19047148 - 19047239
Alignment:
Q  252 tttcttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||  ||||||||||||||||||| |||||||| ||||   |||| |||||| |||||||||||||||||||| |||||||||||||    
T  19047148 tttctttttagaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctca 19047239  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 16096747 - 16096829
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| |||||||| |||||| |||||||||||  ||||||||||||||||||| | |||| ||||||    
T  16096747 ggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctca 16096829  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 343
Target Start/End: Original strand, 30838624 - 30838714
Alignment:
Q  253 ttcttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||| |||||||||||||||||||||| |||||||  |||| || ||| ||||||  ||||||||||||||||||| |||||||||||||    
T  30838624 ttcttgtaggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctca 30838714  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 344
Target Start/End: Complemental strand, 43490499 - 43490418
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctcat 344  Q
    |||||||||||||||||| |||||||| |||| | |||| |||||  |||||||||||||||||||| ||||||||||||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctcat 43490418  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 43335864 - 43335781
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||| |||||||   ||||||| ||||||||||| |||| |  ||||||||||||||||||| |||||||||||||    
T  43335864 aggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctca 43335781  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 13780835 - 13780753
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||| |||||  |||||||| |||||||||| ||||||  ||  ||||||||||||||||||| |||||||||    
T  13780835 ggaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctca 13780753  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 33229303 - 33229381
Alignment:
Q  263 aaaatgttacatgaacactcttt-attcatacacctcattatacaccttatgtattagggatattttgataagttcatc 340  Q
    |||||| ||||||||||| |||| |||| ||||||||||| ||||||  ||||||||||||||||||| ||||||||||    
T  33229303 aaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatc 33229381  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 41282072 - 41281992
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||| ||||| |||||||||  ||| ||||||  ||| |||||||| |||||||||| |||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctca 41281992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 16803967 - 16804050
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| ||||| |||||||||  ||| |||| |  ||| |||||||| |||||||||| |||||||||    
T  16803967 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctca 16804050  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 16843249 - 16843332
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| ||||| |||||||||  ||| |||| |  ||| |||||||| |||||||||| |||||||||    
T  16843249 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctca 16843332  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 43114556 - 43114639
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||||||||||||||| ||||| |||||||||  ||| ||||||  ||| |||||||| |||||| ||| |||||||||    
T  43114556 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 43114639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 12415560 - 12415478
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| ||||| |||||||||| ||| ||||||  ||| |||||||| |||||| ||| || ||||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctca 12415478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 12427620 - 12427538
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||| ||||| |||||||||| ||| ||||||  ||| |||||||| |||||| ||| || ||||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctca 12427538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 11825752 - 11825672
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||| ||||| |||||||||  ||| ||||||  ||| |||||||| |||||| ||| |||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 11825672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 18491703 - 18491787
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||| ||||| |||||||||  ||| ||||||| ||| |||| | | |||||| ||| |||||||||    
T  18491703 taggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctca 18491787  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 34817875 - 34817829
Alignment:
Q  262 gaaaatgttacatgaacactctttattcatacacctcattatacacc 308  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacacc 34817829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 42849908 - 42849876
Alignment:
Q  311 atgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||||||||||||||    
T  42849908 atgtattagggatattttgataagttcatctca 42849876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 14285671 - 14285758
Alignment:
Q  256 ttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||| |||||  ||||| ||||| |||||||||  ||| |||||| ||| |||||  ||||||||| ||| |||||||||    
T  14285671 ttttaggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctca 14285758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 6518571 - 6518487
Alignment:
Q  258 ttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||| |||||||||||||||||| ||||| ||||||||   ||| ||||||  ||| |||||||| |||||| ||| |||||||||    
T  6518571 ttagaaaaatgttacatgaacac-ctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctca 6518487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 966935 - 966899
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacc 296  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  966935 aggaaaatgttacatgaacaccctttaatcatacacc 966899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 8896681 - 8896601
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||| ||||||||| |||   |||| |||||| |||  | |||| |||||||| ||| |||||||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctca 8896601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 11250 - 11333
Alignment:
Q  260 aggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||| |||||||||| ||||||||||||||| |||| ||||||  || |||||||||||||||| |||||||||||||    
T  11250 aggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctca 11333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 112646 - 112737
Alignment:
Q  252 tttcttttaggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    ||||||||  ||||||||||||||||||| |||||||| ||||   |||| |||||| |||||||||||||||||||| |||||||||||||    
T  112646 tttctttttagaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctca 112737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 14290 - 14206
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||| |||||||  |||||| |||| |||| | |||||||||||||||||||  |||||||||||||    
T  14290 taggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctca 14206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 24618 - 24534
Alignment:
Q  259 taggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||||||| |||||||  |||||| |||| |||| | |||||||||||||||||||  |||||||||||||    
T  24618 taggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctca 24534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 45817 - 45737
Alignment:
Q  263 aaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatctca 343  Q
    |||||||||||||||||| ||||| |||||||||  ||| |||| | ||||||||| |||||||||| ||| |||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctca 45737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 23521 - 23441
Alignment:
Q  261 ggaaaatgttacatgaacactctttattcatacacctcattatacaccttatgtattagggatattttgataagttcatct 341  Q
    ||||||||||| |||||||| |||||||| |||||  |||| |||| |  ||||||||| ||||||||| |||||||||||    
T  23521 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 23441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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