View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4679_low_16 (Length: 347)
Name: NF4679_low_16
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 129 - 321
Target Start/End: Complemental strand, 43188473 - 43188281
Alignment:
| Q |
129 |
gtaaagagaaaatgataaatagaatgaattgagttcattgattgtatatgatgaagtaggcaaaacaactttacttgaagcttctcgcgaatgatgtgac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43188473 |
gtaaagagaaaatgataaatagaatgaattgagttcattgattgtatatgatgaagtaggcaaaacaactttacttgaagcttctcgcgaatgatgtgac |
43188374 |
T |
|
| Q |
229 |
aattgacaccaatatgttttgtgtgttcatgtacgcaaaggttggccgtgatgtgacacaaagaccgactataacagtaaaggagtgctggtg |
321 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43188373 |
aattgacaccaatatgttttgtgcgttcatgtacgcaaaggttggccgtgatgtgacacaaagaccgactatcacagtaaaggagtgctggtg |
43188281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 43188616 - 43188512
Alignment:
| Q |
15 |
tgaacaacaggaagaacagatggaccacaaactataaaatcctcctaaagtgggaaaattgtacgtggatcactttggtacattgtttactatggattac |
114 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
43188616 |
tgaacaacaggaagaatagatgaaccacaaactataaaatcctcctaaagtgggaaaattgtacgcggattactttggtacattgtttactatggattac |
43188517 |
T |
|
| Q |
115 |
tcgct |
119 |
Q |
| |
|
||||| |
|
|
| T |
43188516 |
tcgct |
43188512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 43182382 - 43182335
Alignment:
| Q |
133 |
agagaaaatgataaatagaatgaattgagttcattgattgtatatgat |
180 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43182382 |
agagaaaatgatgaatagaatgaattgagttcattgattgtaaatgat |
43182335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University