View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4679_low_17 (Length: 340)
Name: NF4679_low_17
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 28128986 - 28129289
Alignment:
| Q |
19 |
tttctgtccctaatgaaactgtaaccatgtttgttgccactgaaattgcagatctaaagctagacccacatggactcttagactccacataaggattctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28128986 |
tttctgtccctaatgaaactgtaaccatgtttgttgccactgaaattgcagatccaaagctagacccacatggactcttagactccacataaggattctg |
28129085 |
T |
|
| Q |
119 |
caataacatgttactaatcagtaatactatacttaaattaaaaatcaaccaatatcaaagttagcatatcacaaatgtcatttgtgtcactctgaaatta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129086 |
caataacatgttactaatcagtaatactatacttaaattaaaaatcaaccaatatcaaagttagcatatcacaaatgtcatttgtgtcactctgaaatta |
28129185 |
T |
|
| Q |
219 |
cattctatttttaagccgatttttatatacaacttcattaagttcttcttccnnnnnnnnnngagagacttaagttcttctacttcttctttactataca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
28129186 |
cattctatttttaagccgatttttatatacaacttcattaagttcttctacc-tttttttttgagagacttaagttcttctacttcttctttactataca |
28129284 |
T |
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| Q |
319 |
tatat |
323 |
Q |
| |
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||||| |
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| T |
28129285 |
tatat |
28129289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 28110479 - 28110580
Alignment:
| Q |
19 |
tttctgtccctaatgaaactgtaaccatgtttgttgccactgaaattgcagatctaaagctagacccacatggactcttagactccacataaggattctg |
118 |
Q |
| |
|
|||||||||| || ||||||| ||||||||| |||||||||||||| || ||| |||||||||| |||||||| | || ||||||||||| ||||| |
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| T |
28110479 |
tttctgtccccaaagaaactgcaaccatgttagttgccactgaaatggcttatccaaagctagacgtgcatggactttcggattccacataagggttctg |
28110578 |
T |
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| Q |
119 |
ca |
120 |
Q |
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|| |
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| T |
28110579 |
ca |
28110580 |
T |
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