View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4679_low_20 (Length: 309)

Name: NF4679_low_20
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4679_low_20
NF4679_low_20
[»] chr4 (2 HSPs)
chr4 (13-305)||(20318847-20319139)
chr4 (68-161)||(22216055-22216150)
[»] chr3 (3 HSPs)
chr3 (84-241)||(20337122-20337281)
chr3 (84-241)||(20315231-20315390)
chr3 (84-118)||(20288598-20288632)
[»] chr8 (2 HSPs)
chr8 (69-190)||(21230102-21230225)
chr8 (128-226)||(24671820-24671918)
[»] chr6 (2 HSPs)
chr6 (73-234)||(8321792-8321949)
chr6 (126-166)||(12973052-12973092)
[»] chr7 (1 HSPs)
chr7 (102-160)||(20146371-20146430)
[»] scaffold0043 (1 HSPs)
scaffold0043 (82-162)||(57782-57864)
[»] chr5 (1 HSPs)
chr5 (84-168)||(23772096-23772182)
[»] chr2 (1 HSPs)
chr2 (82-166)||(27867567-27867651)
[»] chr1 (3 HSPs)
chr1 (109-194)||(13209356-13209442)
chr1 (96-169)||(16259876-16259949)
chr1 (102-163)||(25131066-25131130)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 20319139 - 20318847
Alignment:
Q  13 atacttgtgtgcaatgtaatacaaacgatatcccaataacaaccatatatctgaacaaaaatagtattaacatggaacactcaatatataaagaattata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  20319139 atacttgtgtgcaatgtaatacaaacgatatcccaataacaaccatatattcgaacaaaaatagtattcacatggaacactcaatatataaagaattata 20319040  T
Q  113 gtagaagagtggaatatatttaactcaaaatctcaccggttatgctatacaaaaaagttgtggtcattttgatgagtatctttggcaataagctccaata 212  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  20319039 gtagaagagtggaatatatttaactcaaaatctcatcggttatgctatacaaaaaagttgtggtcattttgatgaatatcttcggcaataagctccaata 20318940  T
Q  213 gttattgtgctcttaaacttcgggcgtaatctagctttccttcatagaatcattggacaaccaccctagtccaccaacttcatgacaacattg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20318939 gttattgtgctcttaaacttcgggcgtaatctagctttccttcatagaatcattggacaaccaacctagtccaccaacttcatgacaacattg 20318847  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 22216150 - 22216055
Alignment:
Q  68 caaaaatagtattaacatggaacactcaatatataaagaattatagtagaagagtggaat--atatttaactcaaaatctcaccggttatgctata 161  Q
    ||||||||| ||| | ||| |||||||||||||||| ||||||||||||||||||||| |  ||||||  |||||| |||||||||||||||||||    
T  22216150 caaaaatagcattcatatgaaacactcaatatataaggaattatagtagaagagtggattgaatatttggctcaaattctcaccggttatgctata 22216055  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 241
Target Start/End: Complemental strand, 20337281 - 20337122
Alignment:
Q  84 atggaacactcaatatataaagaattatagtagaagagtgga--atatatttaactcaaaatctcaccggttatgctatacaaaaaagttgtggtcattt 181  Q
    ||||||||||||||||| |||||||||||||||||||||| |  | | |||| ||||||| ||||||   |||||||||||| ||||| | |||| |||     
T  20337281 atggaacactcaatatagaaagaattatagtagaagagtgaattaaacatttgactcaaattctcactaattatgctatacagaaaagatatggtgattg 20337182  T
Q  182 tgatgagtatctttggcaataagctccaatagttattgtgctcttaaacttcgggcgtaa 241  Q
    |||| ||||||||| |||  || | ||||||||||  |||||||||| ||||||| ||||    
T  20337181 tgataagtatctttcgcatcaaaccccaatagttaccgtgctcttaatcttcgggggtaa 20337122  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 241
Target Start/End: Complemental strand, 20315390 - 20315231
Alignment:
Q  84 atggaacactcaatatataaagaattatagtagaagagtgga--atatatttaactcaaaatctcaccggttatgctatacaaaaaagttgtggtcattt 181  Q
    ||||||||||||||||| ||||||||||||||||||||||||  | | ||||  |||||| ||||||   |||||||||||| ||||| | |||| |||     
T  20315390 atggaacactcaatatagaaagaattatagtagaagagtggattaaacatttggctcaaattctcactaattatgctatacagaaaagatatggtgattg 20315291  T
Q  182 tgatgagtatctttggcaataagctccaatagttattgtgctcttaaacttcgggcgtaa 241  Q
    |||| | ||||||| |||  || |  |||||||||  |||||||||| ||||||| ||||    
T  20315290 tgataaatatctttcgcatcaaacctcaatagttaccgtgctcttaatcttcgggggtaa 20315231  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 118
Target Start/End: Complemental strand, 20288632 - 20288598
Alignment:
Q  84 atggaacactcaatatataaagaattatagtagaa 118  Q
    |||||||||||||||||||||||||||||||||||    
T  20288632 atggaacactcaatatataaagaattatagtagaa 20288598  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 21230225 - 21230102
Alignment:
Q  69 aaaaatagtattaacatggaacactcaatatataaagaattatagtagaagagtggaat--atatttaactcaaaatctcaccggttatgctatacaaaa 166  Q
    |||||||| ||| | ||| ||||||||||||| ||||||||||| |||||||||||| |  ||||||  |||||| |||||| |||||||||||||||||    
T  21230225 aaaaatagcattcatatgaaacactcaatatagaaagaattatattagaagagtggattgaatatttgtctcaaattctcactggttatgctatacaaaa 21230126  T
Q  167 aagttgtggtcattttgatgagta 190  Q
    ||  | |||| ||| |||||||||    
T  21230125 aatatatggtgattgtgatgagta 21230102  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 24671820 - 24671918
Alignment:
Q  128 atatttaactcaaaatctcaccggttatgctatacaaaaaagttgtggtcattttgatgagtatctttggcaataagctccaatagttattgtgctctt 226  Q
    |||||| |||||||||||||||| ||||||||||| |||||| |||||| ||||||| |||||||||  ||| ||||  |||||||||||  |||||||    
T  24671820 atatttgactcaaaatctcaccgattatgctataccaaaaagatgtggtgattttgacgagtatcttctgcattaagtaccaatagttatcctgctctt 24671918  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 8321949 - 8321792
Alignment:
Q  73 atagtattaacatggaacactcaatatataaagaattatagtagaagagtggaatatatttaactcaaaatctcaccggttatgctatacaaaaaagttg 172  Q
    |||| ||| ||||||||||||| | ||| ||| | |||||||||||||||||||||||||| ||||||| | ||||| |||||||||||  | ||||  |    
T  8321949 atagcattcacatggaacactctaaatagaaatagttatagtagaagagtggaatatatttgactcaaagtatcaccagttatgctata-tagaaagagg 8321851  T
Q  173 tggtcattttgatgagtatctttggcaataagctccaatagttattgtgctcttaaacttcg 234  Q
    |||| ||| |||||||||||||   | | ||||  |||||||||| |||||||| |||||||    
T  8321850 tggtgattatgatgagtatctt---ccacaagcatcaatagttatcgtgctcttgaacttcg 8321792  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 12973052 - 12973092
Alignment:
Q  126 atatatttaactcaaaatctcaccggttatgctatacaaaa 166  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  12973052 atatatttggctcaaaatctcaccggttatgctatacaaaa 12973092  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 20146430 - 20146371
Alignment:
Q  102 aaagaattatagtagaag-agtggaatatatttaactcaaaatctcaccggttatgctat 160  Q
    |||||||||||||||||  ||||||||||||||  |||||||||||||||||||| ||||    
T  20146430 aaagaattatagtagaaatagtggaatatattttcctcaaaatctcaccggttatactat 20146371  T

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Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 57864 - 57782
Alignment:
Q  82 acatggaacactcaatatataaagaattatagtagaa-gagtggaatatat--ttaactcaaaatctcaccggttatgctatac 162  Q
    ||||||||||| || |||| ||||||||||||||||| |||||||||||||  ||  ||||||||||||| || ||||||||||    
T  57864 acatggaacacaca-tatagaaagaattatagtagaaagagtggaatatatatttggctcaaaatctcactggctatgctatac 57782  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 23772096 - 23772182
Alignment:
Q  84 atggaacactcaatatataaagaattatagtagaagagtggaat--atatttaactcaaaatctcaccggttatgctatacaaaaaa 168  Q
    ||||||||||||  ||| |||||||||||||| |||| |||| |  |||||||  |||||||||  ||| |||||||||||||||||    
T  23772096 atggaacactcatgatagaaagaattatagtaaaagaatggattgaatatttaggtcaaaatctacccgattatgctatacaaaaaa 23772182  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 27867567 - 27867651
Alignment:
Q  82 acatggaacactcaatatat-aaagaattatagtagaagagtggaa-tatatttaactcaaaatctcaccggttatgctatacaaaa 166  Q
    ||||||||||| || ||||| |||||| |||||||||| ||||||| |||||||  || |||||||||||||||||| |||||||||    
T  27867567 acatggaacacaca-tatatgaaagaactatagtagaa-agtggaaatatatttggcttaaaatctcaccggttatgttatacaaaa 27867651  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 13209442 - 13209356
Alignment:
Q  109 tatagtagaagagtggaatatatttaa-ctcaaaatctcaccggttatgctatacaaaaaagttgtggtcattttgatgagtatctt 194  Q
    ||||||||||||| |||||||||||   || ||| |||||||| |||||||||||||||||   ||| | ||| |||||||||||||    
T  13209442 tatagtagaagaggggaatatattttggctaaaagtctcaccgattatgctatacaaaaaataggtgatgattatgatgagtatctt 13209356  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 16259876 - 16259949
Alignment:
Q  96 atatataaagaattatagtagaagagtggaatatatttaactcaaaatctcaccggttatgctatacaaaaaag 169  Q
    ||||| |||||||| ||||||||||||  ||| |||||  |||||||||||||  |||||| ||| ||||||||    
T  16259876 atatagaaagaattgtagtagaagagtaaaatttatttggctcaaaatctcactagttatgatattcaaaaaag 16259949  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 25131066 - 25131130
Alignment:
Q  102 aaagaattatagtagaag-agtggaatata--tttaactcaaaatctcaccggttatgctataca 163  Q
    |||||||||||| ||||  |||||||||||  |||  ||||||||||||||||||||||||||||    
T  25131066 aaagaattatagaagaaatagtggaatataaatttggctcaaaatctcaccggttatgctataca 25131130  T

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