View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4679_low_21 (Length: 303)
Name: NF4679_low_21
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 90 - 286
Target Start/End: Original strand, 9887182 - 9887381
Alignment:
| Q |
90 |
ttgataagttattgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaagcttgcgattcaatcc |
189 |
Q |
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| T |
9887182 |
ttgataagttattgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaagcttgtgattcaatcc |
9887281 |
T |
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| Q |
190 |
cagg---ttaacttcatcttctcgcaaccaccctgtcgtgaggtgcttctagagctggcgcaaaattgcaataagataccattaccaaagtctatagtag |
286 |
Q |
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| T |
9887282 |
caggtaattaacttcatcttctcgcaaccaccctgtcgtgaggtgcttctagagctggcgcaaaattgcaacaagataacattaccaaagtctatagtag |
9887381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 9887031 - 9887120
Alignment:
| Q |
4 |
aaggttcatattcttccacacccattgatttcaataaatttaaagattgcacaatctttgcatcccttggcatattcaagtctttgttga |
93 |
Q |
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| T |
9887031 |
aaggttcatattctttcacacccattgatttcaacaaatttaaagattgcacaatcttttcatcccttggcatattcaagtctttgttga |
9887120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 9886988 - 9886915
Alignment:
| Q |
101 |
ttgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaag |
174 |
Q |
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| T |
9886988 |
ttgatgtgttaacagatgcccaagtgtattcagagcatgctagcaagtctgcaattgatattcatgatgttaag |
9886915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 9901621 - 9901686
Alignment:
| Q |
215 |
caccctgtcgtgaggtgcttctagagctggcgcaaaattgcaataagataccattaccaaagtcta |
280 |
Q |
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| T |
9901621 |
caccctgtcttgaggtacttctggaggtagcacaaaattgcaacaagataccattaccaaagtcta |
9901686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9887153 - 9887117
Alignment:
| Q |
1 |
cacaaggttcatattcttccacacccattgatttcaa |
37 |
Q |
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| T |
9887153 |
cacaaggttcatattcttccacacctattgacttcaa |
9887117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 50747468 - 50747597
Alignment:
| Q |
101 |
ttgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaagcttgcgattcaatcccaggttaactt |
200 |
Q |
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| T |
50747468 |
ttgatgtgttaacagatgcccaggtgtattcagagcatgctggcaagcctgcaattgatgttgatgatgttaagctggccattcaatcccaggtcaactt |
50747567 |
T |
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| Q |
201 |
catcttctcgcaaccaccctgtcgtgaggt |
230 |
Q |
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| T |
50747568 |
cagcttctctcaaccaccccctcgtgaggt |
50747597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 50747424 - 50747355
Alignment:
| Q |
5 |
aggttcatattcttccacacccattgatttcaataaatttaaagattgcacaatctttgcatcccttggcatattc |
80 |
Q |
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| T |
50747424 |
aggttcatattcttccacacccattgatttcaa------caaagactgcataatctttgcatcccttggcatattc |
50747355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 50748576 - 50748632
Alignment:
| Q |
227 |
aggtgcttctagagctggcgcaaaattgcaataagataccattaccaaagtctatag |
283 |
Q |
| |
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|||||||||||||||| || |||||| |||| ||||||||||| || |||||||||| |
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| T |
50748576 |
aggtgcttctagagctagcacaaaatcgcaacaagataccattgccgaagtctatag |
50748632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 4328604 - 4328475
Alignment:
| Q |
101 |
ttgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaagcttgcgattcaatcccaggttaactt |
200 |
Q |
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| T |
4328604 |
ttgatgtgttaacagatgcccaggtgtattcagagcatgctggcaagcctgcaattgatgttgatgatgttaagctggccattcaatcccaggtcaactt |
4328505 |
T |
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| Q |
201 |
catcttctcgcaaccaccctgtcgtgaggt |
230 |
Q |
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| T |
4328504 |
cagcttctctcaaccaccccctcgtgaggt |
4328475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 4328648 - 4328717
Alignment:
| Q |
5 |
aggttcatattcttccacacccattgatttcaataaatttaaagattgcacaatctttgcatcccttggcatattc |
80 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
4328648 |
aggttcatattcttccacacccattgatttcaa------caaagactgcacaatctttgcatcccttggcatattc |
4328717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 4327496 - 4327440
Alignment:
| Q |
227 |
aggtgcttctagagctggcgcaaaattgcaataagataccattaccaaagtctatag |
283 |
Q |
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|||||||||||||||| || |||||| |||| ||||||||||| || |||||||||| |
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| T |
4327496 |
aggtgcttctagagctagcacaaaatcgcaacaagataccattgccgaagtctatag |
4327440 |
T |
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