View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4679_low_3 (Length: 649)
Name: NF4679_low_3
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 46933276 - 46932975
Alignment:
| Q |
8 |
gagcacagagaggggttagttcgtcttgttgttaaattaagatnnnnnnnnnnnnnnntgtatacaattcccataaatatgcacgtaacatgaacaaggg |
107 |
Q |
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| T |
46933276 |
gagcacagagaggggttagttcgtcttgttgttaaattaagataaaaaaattaaaaaatgtatacaattcccataaatatgcacgtaacatgaacaaggg |
46933177 |
T |
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| Q |
108 |
aataaggtagtggtaataaataagtgttttagaacagnnnnnnnnnnnnnnggattcacgagactagtaatactcacagatgaatcagaaaaatataaag |
207 |
Q |
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| T |
46933176 |
aataaggtagtggtaataaataagtgttttagaacagaaaaaaacaaaaaaggattcacgagactagtaatactcacagatgaatcagaaaaatataaag |
46933077 |
T |
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| Q |
208 |
gactataggtactgtcaccatgtcagccgctgaaacattgcagtagtaatattagagagtactattatacagaaagataaagagtcaggggggtgtgaac |
307 |
Q |
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| T |
46933076 |
gactataggtactgtcaccatgtcagccgctgaaacattgcagtagtaatattagagagtactattatacagaaagataaagagtcaggggggtgtgaac |
46932977 |
T |
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| Q |
308 |
tg |
309 |
Q |
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|| |
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| T |
46932976 |
tg |
46932975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 381 - 539
Target Start/End: Complemental strand, 46932900 - 46932742
Alignment:
| Q |
381 |
caacaagggcatgcatgattgtttacaacttgccagatacttgtcattttggtcctttcctttcctttcttcttccccttcacgttttctagactaataa |
480 |
Q |
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| T |
46932900 |
caacaagggcatgcatgattgtttacaacttgccagatacttgtcattttggtcctttcctttcctttcttcttccccttcacgttttctagactaataa |
46932801 |
T |
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| Q |
481 |
ttcccactttctcatttgattatcgggacttgaagctgtcggtatttttagatttctca |
539 |
Q |
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| T |
46932800 |
ttcccactttctcatttgattatcgggacttgaagctgtcggtatttttagatttctca |
46932742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 46932634 - 46932567
Alignment:
| Q |
567 |
gagttcatggtgcgcctatgnnnnnnntttacaaatattttacttgcatgaatatatgagaaaaaatt |
634 |
Q |
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| T |
46932634 |
gagttcatggtgcgcctatgaaaaaaattcacaaatattttacttgcatgaatatatgagaaaaaatt |
46932567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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