View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4679_low_4 (Length: 601)
Name: NF4679_low_4
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 88 - 592
Target Start/End: Original strand, 3809590 - 3810099
Alignment:
| Q |
88 |
tatgggattatcatgtagaagaagatcatgtctatatgctgctattgaagctcaagatagaatacggctcccatcacaaaagggttcagattatatggta |
187 |
Q |
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| T |
3809590 |
tatgcgattatcatgtagaagaagatcatgtctatatgctgctattgaagctcaagatagaatacggctcccatcacaaaagggttcagattacatggta |
3809689 |
T |
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| Q |
188 |
tgtcttcaagctaagtttaagtttacatatgnnnnnnn-----ataattgatgtgtttacatattttattatagaggcttaagtgtgtttgtttgttgtg |
282 |
Q |
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| T |
3809690 |
tgtcttcaagctaagtttaagtttacatatatatattttttttataattgatgtgtttacatattttattatagaggcttacgtgtgtttgtttgttgtg |
3809789 |
T |
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| Q |
283 |
tagggattcacttatcgtgaactatttaatgacatcatccacaaagaatgcaaaaaactaagcaattaagtttggaggaaattggaagcactgtaacagc |
382 |
Q |
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| T |
3809790 |
tagggattcacttatcctgaactatttaatgatatcatccacaaagaatgcaaaaaactgagcaattaagtttggaggaaattggaagcagtgtaacagc |
3809889 |
T |
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| Q |
383 |
ttgtttagtgtcataatctgcactctaacatctttaatatattgttccatttctaaattgcggtaacactattgctagaaatgaattatgggtaacaaca |
482 |
Q |
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| T |
3809890 |
ttatttagtgtcataatctgcactctaacatctttaatatatcgttctatttctaaattgcggtaacactattgctagaaatgaattatgggtaacaaca |
3809989 |
T |
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| Q |
483 |
cgtacatgagaagaagaaaattgttcatttcattgatcaattgaaaccattaagccaaatatagaataatttatcaattggtagtccaacaacaacttat |
582 |
Q |
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| T |
3809990 |
cgtaaatgagaagaagaaaatagttcatttcattaatcaattgaatccattaagccaaatatagaataatttatcaattggtagtccaacaacagcttat |
3810089 |
T |
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| Q |
583 |
tcagtataat |
592 |
Q |
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| T |
3810090 |
tcagtataat |
3810099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 3808941 - 3809034
Alignment:
| Q |
1 |
agtacttttctttctttctctgtgttgattctcatctgtacacctatattaatgtgtttcttcttaatatttatgtcacgggtgcactatggga |
94 |
Q |
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| T |
3808941 |
agtacttttctttctttctctgtgttgattctcatctgtacacctatattgatgtgtttcttcttaatatttatgtcacagatgcactacggga |
3809034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 395 - 546
Target Start/End: Original strand, 3810095 - 3810244
Alignment:
| Q |
395 |
ataatctgcactctaacatctttaatatattgttccatttctaaattgcggtaacactattgctagaaatgaattatgggtaacaacacgtacatgagaa |
494 |
Q |
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| T |
3810095 |
ataatttgcactgtaacaacttttagatattgttccatttctaagttgcggtacaactattgttaaaaatcaattatgggtaacaacacgtaaa--aaga |
3810192 |
T |
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| Q |
495 |
gaagaaaattgttcatttcattgatcaattgaaaccattaagccaaatatag |
546 |
Q |
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| T |
3810193 |
gaagaaaatagtttatttcatttatcaattgacaccattaagccaaatatag |
3810244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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