View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4679_low_5 (Length: 531)
Name: NF4679_low_5
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679_low_5 |
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| [»] scaffold0697 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 358 - 513
Target Start/End: Complemental strand, 38128806 - 38128650
Alignment:
| Q |
358 |
tgaagatggtcctaatgctaagttggatggagtaaattgtagttttccttnnnnnnntacaaccagactacagatttagtgccagcagatagcaatacat |
457 |
Q |
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| T |
38128806 |
tgaagatggtcctaatgctaagttggatggagtaaattgcagttttccttaaaaaaatacaaccagactacagatttagtgccagcagatagcaatacat |
38128707 |
T |
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| Q |
458 |
cttagtaaatagaggt-nnnnnnnnntcagagataatacccctgctgggaccagagt |
513 |
Q |
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| T |
38128706 |
cttagtaaatagaggtaaaaaaaaaatcagagataatacccctgctgggaccagagt |
38128650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 102 - 304
Target Start/End: Original strand, 45266053 - 45266255
Alignment:
| Q |
102 |
agactgtagataaatgtgtagtttagtcctcctgacttacttttcatcataattgaacagaaaatgtcatatttgtaagtttaatgaccagagtgcacat |
201 |
Q |
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| T |
45266053 |
agactgtacataaatgtgtagtttagttcttctgaataagttcccatcagaattgaggagaaaatgtcatatttttaggtttaatgaccagagtgcacat |
45266152 |
T |
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| Q |
202 |
gaacctaaactggagaaggtaaattggaattttctcatcaacaaagttcacacaaaaaatggtcacagttatttgagcatgaaaatttctgtttatgttt |
301 |
Q |
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| T |
45266153 |
gaacctaaattgaagaaggtaaattggaattctcccatgaagaaagttggtacaaaaaatggtcaaatttatttgagcatgacaagttctgcttatgttt |
45266252 |
T |
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| Q |
302 |
gaa |
304 |
Q |
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||| |
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| T |
45266253 |
gaa |
45266255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 186 - 304
Target Start/End: Original strand, 21530841 - 21530959
Alignment:
| Q |
186 |
tgaccagagtgcacatgaacctaaactggagaaggtaaattggaattttctcatcaacaaagttcacacaaaaaatggtcacagttatttgagcatgaaa |
285 |
Q |
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| T |
21530841 |
tgaccagagtgcacatgaacctaaattgaagaagataaattggaattctcccatgaagaaagttggcacaaaaaatggtcaaatttatttgagcatgaca |
21530940 |
T |
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| Q |
286 |
atttctgtttatgtttgaa |
304 |
Q |
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| T |
21530941 |
attttcgcttatgtttgaa |
21530959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 22907250 - 22907132
Alignment:
| Q |
186 |
tgaccagagtgcacatgaacctaaactggagaaggtaaattggaattttctcatcaacaaagttcacacaaaaaatggtcacagttatttgagcatgaaa |
285 |
Q |
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| T |
22907250 |
tgaccagagtgcacatgaacctaaattgaagaagataagttggaattctcccatgaagaaagttggcacaaaaaatggttaaatttatttgagcatgaca |
22907151 |
T |
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| Q |
286 |
atttctgtttatgtttgaa |
304 |
Q |
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|||| || ||||||||||| |
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| T |
22907150 |
atttttgcttatgtttgaa |
22907132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 489 - 521
Target Start/End: Original strand, 45266469 - 45266501
Alignment:
| Q |
489 |
ataatacccctgctgggaccagagtgatgatgt |
521 |
Q |
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| T |
45266469 |
ataatacccctgctgggaccagagtgaggatgt |
45266501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 186 - 304
Target Start/End: Original strand, 1796 - 1914
Alignment:
| Q |
186 |
tgaccagagtgcacatgaacctaaactggagaaggtaaattggaattttctcatcaacaaagttcacacaaaaaatggtcacagttatttgagcatgaaa |
285 |
Q |
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| T |
1796 |
tgaccagagtgcacatgaacctaaattgaagaagataaattggaattctcccatgaagaaagttggcacaaaaaatggtcaaatttatttgagcatgaca |
1895 |
T |
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| Q |
286 |
atttctgtttatgtttgaa |
304 |
Q |
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|||| | ||||||||||| |
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| T |
1896 |
attttcgcttatgtttgaa |
1914 |
T |
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