View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4679_low_9 (Length: 452)
Name: NF4679_low_9
Description: NF4679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4679_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 49654774 - 49654341
Alignment:
| Q |
1 |
tgaaactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaacatagtaagaaggacaacccattgttcccatgggacataatctgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654774 |
tgaaactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaacatagtaagaaggacaacccattgttcccatgggacataatctgt |
49654675 |
T |
|
| Q |
101 |
tgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtacgattgctgacgtgtagggctgagattcacttgccccacaacctg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654674 |
tgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtacgattgctgacgtgtagggctgagattcacttgccccacaacctg |
49654575 |
T |
|
| Q |
201 |
acctggacactggaattctgctccagtgtctgcaggtgcaccagtagatgctgaactcaacccattgcttccagttccactctgagttttcttcatcttc |
300 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654574 |
acctggacactggaattctgctccagtgtgtgcaggtgcaccggtagatgctgaactcaacccattgcttccagttccactctgagttttcttcatcttc |
49654475 |
T |
|
| Q |
301 |
ttcttaccagaatctcctccgccactttgaccactcctgttctttgtttcctgccccttaccaccagccggagatttctccggtgagccagcactggttt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654474 |
ttcttaccagaatctcctccgccactttgaccactcttgttctttgtttcctgccccttaccaccagccggagatttctccggtgagccagcactggttt |
49654375 |
T |
|
| Q |
401 |
ttgtgttagtactcttgcttttaccgttacactt |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
49654374 |
ttgtgttagtactcttgcttttaccgttacactt |
49654341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 16486421 - 16486263
Alignment:
| Q |
1 |
tgaaactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaacatagtaagaaggacaacccattgttcccatgggacataatctgt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
16486421 |
tgaaactgataagggtcacgatcaaagcctgtacacatgcagggtaatggtggaacatagtaagaaggacaacccattgttcgaatgggacctaatctgt |
16486322 |
T |
|
| Q |
101 |
tgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtacgat |
159 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
16486321 |
tgtaagttacatattgtaccaaaggaggataacatgtttctgcatacaacatgtacgat |
16486263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 21816489 - 21816647
Alignment:
| Q |
1 |
tgaaactgataagggtcacgatcaaggcctgcacacatgtagggtaatggtggaacatagtaagaaggacaacccattgttcccatgggacataatctgt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
21816489 |
tgaaactgataagggtcacgatcaaagcctgtacacatgcagggtaatggtggaacatagtaagaaggacaacccattgttcgaatgggacctaatctgt |
21816588 |
T |
|
| Q |
101 |
tgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtacgat |
159 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
21816589 |
tgtaagttacatattgtaccaaaggaggataacatgtttctgcatacaacatgtacgat |
21816647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 188
Target Start/End: Original strand, 14381448 - 14381479
Alignment:
| Q |
157 |
gattgctgacgtgtagggctgagattcacttg |
188 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
14381448 |
gattgctgacgtgtagggctgagattcacttg |
14381479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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