View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680-Insertion-1 (Length: 714)
Name: NF4680-Insertion-1
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680-Insertion-1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 671; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 12 - 714
Target Start/End: Complemental strand, 71485 - 70783
Alignment:
| Q |
12 |
gaagcctccagaattgcatctgtagattctgcatcagtagctcttgctgatccttccgccaatataggaatcaagcctctgtatattaagctgtgccttg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
71485 |
gaagcctccagaattgcatctgtagattctgcatcagtagctcttgcagatccttctgccaatataggaatcaagcctctgtatattaagctgtgtcttg |
71386 |
T |
|
| Q |
112 |
ctggtgcctcatcactgcaggtccaatcaaatgagtctgtggtcaaaaccggaactaccacagacaagattggaacagctggcctatacttagcaactaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
71385 |
ctggtgcctcatcactgcaggtccaatcaaatgagtctgtggtcaaaaccggaactaccacagacaagattggaacagctggcctatacttagcaactaa |
71286 |
T |
|
| Q |
212 |
cttggctgtactcccacctcgtgtcagcacaacaatgagtttcgctctggccttattggctgtgcgtacagcagttgatgcaaggctttccaatggactc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
71285 |
cttggctgtactcccacctcgtgtcagcacaacaatgagtttcgctctggccttattggctgtgcgtacagcagatgatgcaaggctttccaatggactc |
71186 |
T |
|
| Q |
312 |
ataggcaatggagtagaccttatcatctctttgaagatagcaccatagtcaagggatgattcagcttcgatacaaatgcgggccatgattttcacagcaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
71185 |
ataggcaatggagtagaccttatcatctctttgaagatagcaccatagtcaagggatgattcagcttcaatacaaatgcgggccatgattttcacagcaa |
71086 |
T |
|
| Q |
412 |
gttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgctccagctcgggttgg |
511 |
Q |
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| T |
71085 |
gttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctcgggttgg |
70986 |
T |
|
| Q |
512 |
ccggggagatttgatcatggattcaagcatctgagtagcagtcaccacaggtttgccaacaagattacacttataaatcatcattttctgtgctaggaat |
611 |
Q |
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| T |
70985 |
ccggggagatttgatcatggattcaagcatctgagtagcagtcaccacaggcttgccaacaagattacacttataaatcatcattttctgtgctaggaat |
70886 |
T |
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| Q |
612 |
atcttctcaactgggatctccattccaagatcaccacgtgccaccatgaatgcatcagtctcacgcaggatctcatcaaagtccatgactccctcctgat |
711 |
Q |
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| T |
70885 |
atcttctcaactgggatctccattccaagatcaccacgtgccaccatgaatgcatcagtctcacgcaggatctcatcaaagttcatgactccctcctgat |
70786 |
T |
|
| Q |
712 |
tct |
714 |
Q |
| |
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||| |
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|
| T |
70785 |
tct |
70783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 405 - 669
Target Start/End: Original strand, 32419312 - 32419576
Alignment:
| Q |
405 |
acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgctccagctc |
504 |
Q |
| |
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||||| ||||| || ||||||||||||||| ||||||||||||||||||| || || |||||||| ||||||||||| || |||||||| ||| |||||| |
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| T |
32419312 |
acagcgagttctggataagctccagcagcagtttcaccactaagcatgacacagtctgttccatccagaactgcatttgcaacatcagtagcttcagctc |
32419411 |
T |
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| Q |
505 |
gggttggccggggagatttgatcatggattcaagcatctgagtagcagtcaccacaggtttgccaacaagattacacttataaatcatcattttctgtgc |
604 |
Q |
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| T |
32419412 |
tggttggccggggagatttgatcattgactccaacatctgggtcgcagtaacgaccggttttccttggatattgcacttataaatcatcactttttgtgc |
32419511 |
T |
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| Q |
605 |
taggaatatcttctcaactgggatctccattccaagatcaccacgtgccaccatgaatgcatcag |
669 |
Q |
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| T |
32419512 |
gagaaatattttctcaattggaatttccattccaaggtcaccacgtgccaccataaatgcatcag |
32419576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 405 - 667
Target Start/End: Original strand, 32425590 - 32425852
Alignment:
| Q |
405 |
acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgctccagctc |
504 |
Q |
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||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||| || ||||| ||||||||||| || |||||||| ||| |||||| |
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| T |
32425590 |
acagcaagttctggataagctccagcagcagtttcaccactaagcatgacacaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctc |
32425689 |
T |
|
| Q |
505 |
gggttggccggggagatttgatcatggattcaagcatctgagtagcagtcaccacaggtttgccaacaagattacacttataaatcatcattttctgtgc |
604 |
Q |
| |
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|||||||| || ||||||||||| || || | |||||| || ||||| || || || || || | |||||||||||||||||||| ||| ||||| |
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| T |
32425690 |
tggttggcctaggtgatttgatcattgactccaacatctgcgttgcagtgacaaccggctttccttggatattacacttataaatcatcactttttgtgc |
32425789 |
T |
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| Q |
605 |
taggaatatcttctcaactgggatctccattccaagatcaccacgtgccaccatgaatgcatc |
667 |
Q |
| |
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||| ||||||||||| | ||| || ||||||||||| || |||||||||||||| |||||||| |
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| T |
32425790 |
tagaaatatcttctctattggaatttccattccaaggtcgccacgtgccaccataaatgcatc |
32425852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 7e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 405 - 667
Target Start/End: Original strand, 40596296 - 40596558
Alignment:
| Q |
405 |
acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgctccagctc |
504 |
Q |
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||||||||||| || ||||||||||||||| ||||||| ||||||||||| || || || || || |||||||||||||| ||||| || ||| |||||| |
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| T |
40596296 |
acagcaagttctggataagctccagcagcagtttcaccgctaagcatgacacagtctgtgccgtccagaactgcattggcgacatctgtagcttcagctc |
40596395 |
T |
|
| Q |
505 |
gggttggccggggagatttgatcatggattcaagcatctgagtagcagtcaccacaggtttgccaacaagattacacttataaatcatcattttctgtgc |
604 |
Q |
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|||||||| ||||||||||||||| || || | |||||| || ||||| || ||||| || || | ||| |||||||||||||||| ||||||||| |
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| T |
40596396 |
tggttggcctgggagatttgatcattgactccaacatctgggttgcagtaacaacaggctttccttggatattgcacttataaatcatcactttctgtgc |
40596495 |
T |
|
| Q |
605 |
taggaatatcttctcaactgggatctccattccaagatcaccacgtgccaccatgaatgcatc |
667 |
Q |
| |
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||| ||||| ||||||| ||| || ||||||||||| ||||||||||||||||| |||||||| |
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| T |
40596496 |
tagaaatattttctcaattggaatttccattccaaggtcaccacgtgccaccataaatgcatc |
40596558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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