View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680-Insertion-2 (Length: 673)
Name: NF4680-Insertion-2
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680-Insertion-2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 108 - 673
Target Start/End: Complemental strand, 15753983 - 15753421
Alignment:
| Q |
108 |
ctggatgacttgatttactctcaatacttgaaatcctaccaaagttttcattaaccaaatagctgatacataagctcttttatgataaccgtgtatgcta |
207 |
Q |
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| T |
15753983 |
ctggatgacttgatttactctcaatacttgaaatcctaccaaagttttcattaaccaaatagcttatacataagctcttttatgataaccgtgtatgcta |
15753884 |
T |
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| Q |
208 |
taattgctcaattaatttgtttattcaagcagggctaaattacgaacattattacgttcgatagataaatgaaaacctaccagtacaataaggtctcatt |
307 |
Q |
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| T |
15753883 |
taattgctccattaatttgtttattcaagcagggctaaactacgaacattattacgttcgatagataaatgaaaacctaccagtacaataaggtctcatt |
15753784 |
T |
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| Q |
308 |
gttgatgtcatctccagcactaaaatctgttacagagaactctcctcttgttatggtgcctgttttatcaaaagccaccgtcttaattctagaaagtgtt |
407 |
Q |
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| T |
15753783 |
gttgatgtcatctccagcactaaaatctgttacagagaactctcctcttgttatggtgcctgttttatcaaaagccaccgtcttaattctagaaagtgtt |
15753684 |
T |
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| Q |
408 |
tcaagataatctccacctttcaatagtaatccacttattgcagcttttgtgagagcacaaaagattgcaaccggtgtggagaggataagagcacaagggc |
507 |
Q |
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| T |
15753683 |
tcaagataatctccacctttcaatagtaatccacttattgcagcttttgtgagagcacaaaagattgcaaccggtgtggagaggataagagcacaagggc |
15753584 |
T |
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| Q |
508 |
atccactcaataaaaccacaagtgctagatgaaaccatgggctccatatcaggaacacttaatgcagctggaaccactgcaatgctagctgaaaatcaca |
607 |
Q |
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| T |
15753583 |
atccactcaataaaaccacaagtgctagatgaaaccat-ggctccatatcaggaacacttaatgcagctggaaccactgcaatgctagctgaaatcaaca |
15753485 |
T |
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| Q |
608 |
cgaccgcctgcgatacaacatacacataattcagatatcgaatgttgtaatacgtgattattatac |
673 |
Q |
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| T |
15753484 |
caacc-actgcgatacaacataaacataattcaaatat-taatgttgtaatatgtgattattatac |
15753421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 37728046 - 37727977
Alignment:
| Q |
8 |
attgtaaatgacacaatccctataatcgttcaatgtctgatgcattatctatcttcccaaaggccatcca |
77 |
Q |
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| T |
37728046 |
attgtaaatgacacaatcccaataatcgttcaatgtctgatgcattatctatcttcccaaaggccatcca |
37727977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 24193540 - 24193473
Alignment:
| Q |
164 |
aaatagctgatacataagctcttttatgataaccgtgtatgctataattgctcaattaatttgtttat |
231 |
Q |
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| T |
24193540 |
aaataacttatacataagtacttatatgataagcgtttatgctataagtgctcaattaagttgtttat |
24193473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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